Clone Read LE_HBa0161D03_T7_201354

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0161D03_T7_201354
Primer
T7
ID from Seq. Facility
LE_HBa_161_D03-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
579 trimmed for vector and quality, 817 raw
Sequence
>LE_HBa0161D03_T7_201354 (raw untrimmed)
TTGGGTCCCGGGGGGTCCTCTAGAGTCGACCTGCAGGCATGCAAGCTTTCCCGTATACAAGTTGGTATGCGTTCAGGGCTATCAGAGTCTTANACGCTGN
CCGGGAGGCCACATAGCATTATCAAGCCTCCTTGACCAATCCGTTCTACTAGCATTCACATTTTTTTACAATATCTGTTTGATATCCCTATTTGACACTT
CAACTTGCCCACAAGTTTGAGGAAAGTAAGGAGTGTCGACATTATGGCGAACCCCATATTTCTCCAATAATACCTTGAACAAATTGTTGCAAAAGTGGGA
TCCCCCATCACTAATAATTGCCCTTGGGGTACCAAATCGAGAGAATATATTCTTTTTGAAGAACGCAGTGACACTCTTCCCTTCATTGTTTGCAAGGGCG
ATAGCTTCCACCCACTTAGATACATAATCAACCGCTACTAAAATATACTTCATTCCATGAGAACTCACAAAAGGACCCACAAAGTCAATACCCCAAAAAA
CAAATAACTCAATCACATGAATGGGGCTTGGAGGGAGCTCTTGCTTTCTTGAAATGCCGCAATCTCTTTCGCATCTATCACATGATTTAGCAAACTCATG
AGCATCTTGATGAAGAGTCGGCCAATAGTAACCTCCTTGCAATTCCTTATGAGTGCTAAGGGTATATACTTTATTCCATATATTCGCCTTTTTTTTTTTT
ATCTTACACATTTATTTTCATCTCACTTTCTGTCTTATTTCAAGATAGACTTATCAGCTGATCATTATTTATAGTATAGATTATCCTTCTAATTATATAT
AATATTACTAAAAGTCA
>LE_HBa0161D03_T7_201354 (trimmed for quality and cloning vector)
AGCTTTCCCGTATACAAGTTGGTATGCGTTCAGGGCTATCAGAGTCTTANACGCTGNCCGGGAGGCCACATAGCATTATCAAGCCTCCTTGACCAATCCG
TTCTACTAGCATTCACATTTTTTTACAATATCTGTTTGATATCCCTATTTGACACTTCAACTTGCCCACAAGTTTGAGGAAAGTAAGGAGTGTCGACATT
ATGGCGAACCCCATATTTCTCCAATAATACCTTGAACAAATTGTTGCAAAAGTGGGATCCCCCATCACTAATAATTGCCCTTGGGGTACCAAATCGAGAG
AATATATTCTTTTTGAAGAACGCAGTGACACTCTTCCCTTCATTGTTTGCAAGGGCGATAGCTTCCACCCACTTAGATACATAATCAACCGCTACTAAAA
TATACTTCATTCCATGAGAACTCACAAAAGGACCCACAAAGTCAATACCCCAAAAAACAAATAACTCAATCACATGAATGGGGCTTGGAGGGAGCTCTTG
CTTTCTTGAAATGCCGCAATCTCTTTCGCATCTATCACATGATTTAGCAAACTCATGAGCATCTTGATGAAGAGTCGGC

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
0.981899
Expected error %
1.48468
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAF24531.1| Score 218 E Value 4e-56 Identity 60.20% Align. Length 577bp (99.65%) Frame 2
F7F22.17 [Arabidopsis thaliana]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAF24529.1| Score 218 E Value 1e-55 Identity 60.20% Align. Length 577bp (99.65%) Frame 2
F7F22.15 [Arabidopsis thaliana]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0161D03
Clone
Clone name
hba-161d3
LE_HBa0161D03
P161D03
Clone type
BAC
Contamination
none
Estimated length
120,551
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found