Clone Read LE_HBa0161O13_SP6_201901

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0161O13_SP6_201901
Primer
SP6
ID from Seq. Facility
LE_HBa_161_O13-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
1 trimmed for vector and quality, 1209 raw
Sequence
>LE_HBa0161O13_SP6_201901 (raw untrimmed)
GTGGTCAGATGGCTGAACGTACGCCAAGGTATACACCACCGGCGGTCGCTCCTCTTTTTAACAGGCGAGCGCACGTGATTATGCGGTCGAGCGATTCCGA
TATGAACCAAATCTGCACAGTNACAAGCGTCCTATTGAGACAGCGGGGATCTGAGATCNATTGCTTCTTCTTCAAAGAAGTTGGTGTTGCTCTGCTNCAA
TCGAGTTTTGACCCGACGTCATGTTACGACTTGACGTAAATNCATCTAGATATAATCGCTACAACCTGCGCGACTACCATCTGTAGTCTGAAATAGACGG
CGCTAGTGTACCACCGGCTATCAAACNTACACACGTATNGCATCACGGACGCCTGACGCNGTTGACTGCACATCACGTACTGACANCACACATCACTTGA
CTTGCATTACACCGACTCAGTGTCGNGCGCAACAGCTTGACTGTGCTNATGACGCNCGACATCAGTCACTGCGAAGATGATCAAATCATGTGTCCGCTCA
CCAACTGTTCTCATAGCGTCAACTCACACGTACCNAGACGTTACGTGCAGCGCGACACGCTATCAAACGACTCGAGACCGCGAACATGACGATGTGTGCG
AGCGGNACGACACCGCATTCTATGAGTGTGCGNTNGCGTCAGACTGACGACGCTACACAATATATCTCGNGNTGACGTTACGTCTCANGAAGCATCGCGT
GCAGTCGTGTGCGACTCTGTCTTGTGTATGTCACTGATGGTTGATCTGCTTGATCTCGNGGACGTCGTCTATGTAACTTGGTGCACTCTTGCTGTACTGC
TACTCTCCTNCCTCTATTGTCGCGACGTCATGCCTATTAGCTGTACTGGTCGATCGAGNTAGCTATGATAAGGTCTCATAATACTCTNCTGATTGTATGC
TGCTACTGCTGCAATGAGGCTGGACGCATCTTCTCCTGANCTCACCATNCATACTCCTATCTGATATACATGAATATAGACNGACTCATAAGACAGCANA
TACTCACACACTGCGGCAAGCATACTNACCTATTCGCACATCGCTCACGTCCTCTATCTCTGCTGTCTTCTGCTGCGCACACTNCTTAGTGACTGCATGA
CAGTAATCAGGAGCGCTTACGACGACTACACCAGCATATCACTGCTCTCTGTCTTTCTCGACTGTCTCTCGTACTAGCATCGCCTCTGCCGTCGCTCTAA
CTGCCACAT
>LE_HBa0161O13_SP6_201901 (trimmed for quality and cloning vector)
G

This is probably not a useful sequence.

Problems:
  • High predicted error rate
  • Low complexity
  • Short cloning insert
 Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
100
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0161O13
Clone
Clone name
hba-161o13
LE_HBa0161O13
C03HBa0161O13
P161O13
Clone type
BAC
Contamination
none
Estimated length
87,955
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found