Clone Read LE_HBa0171B19_T7_202015

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0171B19_T7_202015
Primer
T7
ID from Seq. Facility
LE_HBa_171_B19-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
331 trimmed for vector and quality, 835 raw
Genbank Accession
DU090717
Sequence
>LE_HBa0171B19_T7_202015 (raw untrimmed)
TTTCCTTACTCTTTGGATCGTGGGTTTCTCTAGAGTCGACCTGCAGGCATGCAAGCTTCTCCGTGTTAGCCGAAAGCAGAACTAAATTGTTCGAAAGGTT
ATCCGCGGCCGGATACATCCACCCTGTGGGCCCCAAGCCCGTGGATGTCAATTCCTGATTCTACAGACCAGAGCAGAGATGTGCTTACCATTCCAACAGT
GTTGGACATGATACAGTATATTGTATCAATCTCAAGCACAAGATCCAGGACTTGATTGACTAGGAAGTGGTCTCTCTTCTGCCCGTGGCGCCAAACGTCA
ACACGAATCCATTGCCAAATCATGGGGGTGGAAACATCAATATGATAAAAACTGACGATGATGAGCGTGAAGCAAAAATAATTACTCTTGCTGCTCCAGA
CGACTTTTTGATTGGCTGTTCTGCCTCTTCGTTCTTCTTGTACTAATGTTGATTCTTTTTTTATTTCATTTTCTTTCAGCCCTTGTTTTTCGTATCTCTC
ACAGTTTCTACCTTTATCTTAACTTATATCTTTTCATTCTTTACTGATTTCTTGTCTTTTCCTTATTTGTTGAATGTTTCTTTTTTTCTGTTTTTCTCTC
CTTTCTTCTTATTTTTATTTTCTCCTTCCTTCTTTATTCCTCTTTCTTTTTTATTTTTTCCATCTTTATTTTTATTTACTATTACACTCTTGTTCCTTAT
CTTCTCTTCTTTTCCTCTTCTCATATTCTCCTTTTTCTCTTCCCCTCCTCTTTCTCTCCATTTACTTCTTCTCTTCTCTACTTTTACTCTATTCCTAACA
TTCCTTTCTTATTATCTATAACCATCTATCCCGAN
>LE_HBa0171B19_T7_202015 (trimmed for quality and cloning vector)
AGCTTCTCCGTGTTAGCCGAAAGCAGAACTAAATTGTTCGAAAGGTTATCCGCGGCCGGATACATCCACCCTGTGGGCCCCAAGCCCGTGGATGTCAATT
CCTGATTCTACAGACCAGAGCAGAGATGTGCTTACCATTCCAACAGTGTTGGACATGATACAGTATATTGTATCAATCTCAAGCACAAGATCCAGGACTT
GATTGACTAGGAAGTGGTCTCTCTTCTGCCCGTGGCGCCAAACGTCAACACGAATCCATTGCCAAATCATGGGGGTGGAAACATCAATATGATAAAAACT
GACGATGATGAGCGTGAAGCAAAAATAATTA

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
0.974819
Expected error %
1.65782
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAU89777.1| Score 167 E Value 6e-41 Identity 25.90% Align. Length 308bp (93.05%) Frame 2
gag-pol polyprotein-like [Solanum tuberosum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAQ82037.1| Score 68 E Value 7e-11 Identity 12.60% Align. Length 308bp (93.05%) Frame 2
gag/pol polyprotein [Pisum sativum]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0171B19
Clone
Clone name
hba-171b19
LE_HBa0171B19
P171B19
Clone type
BAC
Contamination
none
Estimated length
130,181
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found