Clone Read LE_HBa0174E19_T7_202586

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0174E19_T7_202586
Primer
T7
ID from Seq. Facility
LE_HBa_174_E19-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
689 trimmed for vector and quality, 786 raw
Sequence
>LE_HBa0174E19_T7_202586 (raw untrimmed)
CCCCGACCCGGGGGGATCTCTAGAGTCGACCTGCAGGCATGCAAGCTTCGTATTCGGCCATATTGTTGCCCTTTTTAGGACGGAGCTTAGCCGCCATCGG
ATAGTGCTAACCATTTTTCTGACACTAAGACTGCTCCAATACCTTTACCTTGATGATTTGCCACTCCATCAAAGAATAATATCCAACCTTGATATGTCTC
AGAAATATCTTCACCCACAAATGACAATTCTTCATCGTGAAAATAAGTCTTGACTGGTTCGTACTCTTCATCAACATGATTTTCTGCAAGATGATCAGCC
AAAGCTTGTGCCTTTATCGCTTTCTGAGTCATATACACAATTTCAAATTCACTCAATAGCATTTTCCACTTAGCTAACTTTCCGGTCGGCATCGCCTTCT
GGAAAATATACTTCAGTGGATCTATTCTGGATATGAGGTATGTAGTATAGGATGACAAATAATGTCTCAACTTCTGGGCTAGCCACGTCAAGGCACAATA
CGCTCCCTCCAGCAAAGTGTAACGAGACTCGTATGGAGTAAACTTCTTGCTTATATAATAAATAGTCCTTTCCTTCTTTCCTGTCTCGTTGTGTTGACCA
AGTACGCATCTGAATGCGCTATCTGAGACAGACAAGTACAGCAATAAAGGACTCCCTTCTCGCGGAGGAACCAATACCGGTGGATTGGATAAATAGTTCT
TGATAGCATCAAAACCGGCCTGGACCTCTTTCGGTCCCTTTTGTCGGGGCGTCTTTTCTTTAACAGCTTTAAAAATAGGGCTCCCA
>LE_HBa0174E19_T7_202586 (trimmed for quality and cloning vector)
AGCTTCGTATTCGGCCATATTGTTGCCCTTTTTAGGACGGAGCTTAGCCGCCATCGGATAGTGCTAACCATTTTTCTGACACTAAGACTGCTCCAATACC
TTTACCTTGATGATTTGCCACTCCATCAAAGAATAATATCCAACCTTGATATGTCTCAGAAATATCTTCACCCACAAATGACAATTCTTCATCGTGAAAA
TAAGTCTTGACTGGTTCGTACTCTTCATCAACATGATTTTCTGCAAGATGATCAGCCAAAGCTTGTGCCTTTATCGCTTTCTGAGTCATATACACAATTT
CAAATTCACTCAATAGCATTTTCCACTTAGCTAACTTTCCGGTCGGCATCGCCTTCTGGAAAATATACTTCAGTGGATCTATTCTGGATATGAGGTATGT
AGTATAGGATGACAAATAATGTCTCAACTTCTGGGCTAGCCACGTCAAGGCACAATACGCTCCCTCCAGCAAAGTGTAACGAGACTCGTATGGAGTAAAC
TTCTTGCTTATATAATAAATAGTCCTTTCCTTCTTTCCTGTCTCGTTGTGTTGACCAAGTACGCATCTGAATGCGCTATCTGAGACAGACAAGTACAGCA
ATAAAGGACTCCCTTCTCGCGGAGGAACCAATACCGGTGGATTGGATAAATAGTTCTTGATAGCATCAAAACCGGCCTGGACCTCTTTC

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
0.98024
Expected error %
0.989615
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAU90285.1| Score 304 E Value 5e-83 Identity 70.20% Align. Length 687bp (99.71%) Frame 2
putative gag/pol polyprotein, 3'-partial [Solanum demissum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT39963.1| Score 290 E Value 3e-77 Identity 23.20% Align. Length 584bp (84.76%) Frame 3
putative polyprotein [Solanum demissum]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0174E19
Clone
Clone name
hba-174e19
LE_HBa0174E19
P174E19
Clone type
BAC
Contamination
none
Estimated length
91,306
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found