Clone Read LE_HBa0079O04_SP6_20262

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0079O04_SP6_20262
Primer
SP6
ID from Seq. Facility
LE_HBa_079_O04-SP6
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
16 trimmed for vector and quality, 839 raw
Sequence
>LE_HBa0079O04_SP6_20262 (raw untrimmed)
GGAAAAGGGTCCTAGCGATAAAATCCATCTTGAAACTGTTCTACGGTTCCCCACAAGCACCCTAACAATAAGGGGCCCCCCTTCNNCNAAANNANNNGNN
NNNACCCTTAAGGAGCCCCCGNANNNNNANNNGAANNGGANNNNANANNNNNNANAAAANGGANAAAGNNNAANNNACCCCNNAAGGGGAAGAGGGAGAN
GANNNGNNNNAGGNGAGAAAGGGGGGGAAGAGAGGGNNNAANAAAAAGGGAAGAGAGAGNNGNAGAAANGAGGGNAGGAGGGAGAAAGAAAAAGNGAGNN
GAANAGNAGAGAANAGNANGGGANAGANNAGAAGNGNNNGANNNGGGAGAGAANNGAAANNGAGANNGAGGAGNNGNNNNAGGAGNAAAAAGNNGNGGAA
GGGAAGAGGAAGANANNGNAGNAAGAGNAANNNNAAAGAAGNGGNNNNGAAGNNNNNNAAGAGNNNNNNNAAGNANANAAAGAAANGNNANANGAAGGGG
AAAGAAGNAANGNGNAAANNGNAANGAAGNAGAAGNGGAGGAANNGGGGNGANNANANNGGNAGNNAGNNNAGGAANNNNNGNNANNANNGGNNNAANAN
NGANAANAANNGNAGAAANGGNAGAGGAAANGAANGGNGGGNNNNNNNNNNGAGNAGNANNANNGGGNNGNNNNANGNAANNNANNAANNNNANNANAAN
NNGNNGAANGAANNGAAANAAANNNNNNNANNNNNGGAANNNAGGAAGGNNNNAGGAANGGGGGNNAAAAAGNNANNNGNNNNGNNANAAAAAAANNGAN
AGNNNAANAAANNNNNNNGGAAAAGGGANANAAGAAAAA
>LE_HBa0079O04_SP6_20262 (trimmed for quality and cloning vector)
TTCCCCACAAGCACCC

This is probably not a useful sequence.

Problems:
  • Low complexity
  • Short cloning insert
Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
0.230268
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0079O04
Clone
Clone name
hba-79o4
LE_HBa0079O04
P079O04
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found