Clone Read LE_HBa0180A02_T7_204278

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0180A02_T7_204278
Primer
T7
ID from Seq. Facility
LE_HBa_180_A02-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
545 trimmed for vector and quality, 733 raw
Genbank Accession
DU095194
Sequence
>LE_HBa0180A02_T7_204278 (raw untrimmed)
GGGGGATCTCTCCTAGAGTCGACCTGCAGGCATGCAAGCTTGCAGTCGATAGCCGTGGAAACCCTTTTACATCTGACCGGAGAGATGTAAAAGCTGGGAG
TTGAAGACCCAAAGATGAACTCCTGGAGATTAGAGAATTCACTCGTGATTGCTTGGTTAATAAATTCCATGAACTAGCCTTCGGTAAATCTTAGAGAGAC
ATATTCTAATGTAGAAAATACCTCTCAAAAATTTTAGTTAAAAATTAAATTATAGCATGCTAACTTTTAGTTAAAAATTAAACTATGGCAAGCTAAGTAG
AGTGAGAAGGAATTCACTGCTTATTATAAAGAAATGGTGTCTTTGTGGAAGGAGTTAGACCGGTGTTAAAATGATGAATCACAATGTTCTGTGAATAGAG
TGAAAGCAAAAAAGGGAAGAAAATGAGAGTTTTCCATTTTTAGCAGCGTTAAATTGGGTCTGAGAGTTTGACGAGGTAAGGTCACGAATCCTGTGAAAAT
ATCCTCTGCCCTCACTTTGTGAAACTTTTTCTGCCATTAGGAGAGAGGAAACTAGGAAGAAAGTTATGACAAGACTTGATTTATATGTTGAACTAAAACC
TTCTATAGACTTTTTAGCTCTTGTAATATTGAAGAATAAAGATGACAAAATCAAAAGGTCATGGTGAGATCTTTGTAAAAAACATTGGCACGCCCTTGAA
ACATGTTGGAAGATTTTAGGGAAAACATCCGAA
>LE_HBa0180A02_T7_204278 (trimmed for quality and cloning vector)
GACCTGCAGGCATGCAAGCTTGCAGTCGATAGCCGTGGAAACCCTTTTACATCTGACCGGAGAGATGTAAAAGCTGGGAGTTGAAGACCCAAAGATGAAC
TCCTGGAGATTAGAGAATTCACTCGTGATTGCTTGGTTAATAAATTCCATGAACTAGCCTTCGGTAAATCTTAGAGAGACATATTCTAATGTAGAAAATA
CCTCTCAAAAATTTTAGTTAAAAATTAAATTATAGCATGCTAACTTTTAGTTAAAAATTAAACTATGGCAAGCTAAGTAGAGTGAGAAGGAATTCACTGC
TTATTATAAAGAAATGGTGTCTTTGTGGAAGGAGTTAGACCGGTGTTAAAATGATGAATCACAATGTTCTGTGAATAGAGTGAAAGCAAAAAAGGGAAGA
AAATGAGAGTTTTCCATTTTTAGCAGCGTTAAATTGGGTCTGAGAGTTTGACGAGGTAAGGTCACGAATCCTGTGAAAATATCCTCTGCCCTCACTTTGT
GAAACTTTTTCTGCCATTAGGAGAGAGGAAACTAGGAAGAAAGTT

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.957537
Expected error %
0.359073
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
emb|CAA36614.1| Score 78 E Value 3e-23 Identity 54.70% Align. Length 375bp (68.81%) Frame 3
unnamed protein product [Solanum tuberosum] pir||S25785 hypothetical protein 2 - potato transposon Tst1
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0180A02
Clone
Clone name
hba-180a2
LE_HBa0180A02
C07HBa0180A02
P180A02
Clone type
BAC
Contamination
none
Estimated length
106,771
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found