Clone Read LE_HBa0080E01_T7_20545

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0080E01_T7_20545
Primer
T7
ID from Seq. Facility
LE_HBa_080_E01-T7
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
6 trimmed for vector and quality, 1070 raw
Sequence
>LE_HBa0080E01_T7_20545 (raw untrimmed)
AAGGGGGGGGAACAAATAACTGATACAAAAAACGGCGAGGATTTTAAGCTGCAGTGCATAGCAAAAAAGCGCGAAAAAATCAAAACACCTTACCCAATAA
AAGGGGGNNNNNNTTTTTAAANAAAAANNAANAANAAAAGAAACCATAAAAGGGGGCGNCNNNNNTTTTTANNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTTTTCAAAAAGGAGCCACACAACCAAACNCNACAACACACAAGAGAGAGGGGAAAAGAAAGAAGAA
CAAAAGACACAGAACACAACGGAACCAAACCACAAGACAACAAGCCCAGACAACAAGGAAACACAACCGAAACACACACCACAACAAAACACGGAAACCA
AAAAAC
CAAAAAAACAAACCACACCAGACCAANCGACAAAACACAAAAAAAAAACCAGACGAAAAACACCCACAAACAGGCACACCAGCAGGCAGCAACC
ACCAAAACGAAAAAACAAAGACAAAAAGGAAGAACAAACAAGAACGCAACAGGAGGGGACGACANCAACACAAGAGACGACGGACGAACAACCGACACAC
CACAGCCCCCCCCACCCCCCCGCCGGACACACAAAGAGCCACAAGACACACCAAAAAACCACCAACANACCGACAAAGCAAAGCGACACCGGCGCCCGCA
ACACCAAACGCAACACACAACGCAACACGAACACCGAAAANCACACCACAAACCAAAACACAACAACACAAAAGACAAACAAAACCACAAACANACCCCG
CCACACGAAAACCCAAGAAACACAACAACAGCAGACACAGCAGCACACAAGAGACAACAAAAAAAAGAAACAAAAAGACAAGAACAACAAAACAAAAAAA
AACCGAAACACAAGACGACAAAAAAAACAGAGCANGACAAAAACAACCACGAAACCACCCACAGCCCACACACCGCAGCCAACGAAAAACAACCACACGA
AACCACACAACAACAAAAAACCACCCCNGNNCNAGACACACCCCATAATAATATATATAAATAATATAAT
>LE_HBa0080E01_T7_20545 (trimmed for quality and cloning vector)
CAAAAA

This is probably not a useful sequence.

Problems:
  • Low complexity
  • Short cloning insert
Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
0.348241
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0080E01
Clone
Clone name
hba-80e1
LE_HBa0080E01
C02HBa0080E01
P080E01
Clone type
BAC
Contamination
none
Estimated length
127,564
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found