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Clone Read LE_HBa0080E24_T7_20591

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0080E24_T7_20591
Primer
T7
ID from Seq. Facility
LE_HBa_080_E24-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
731 trimmed for vector and quality, 796 raw
Genbank Accession
DU037631
Sequence
>LE_HBa0080E24_T7_20591 (raw untrimmed)
CTTCGTTCCACGGGGATCCTCTAGAGTCGACCTGCAGGCATGCAAGCTTTCTTCACATTCGTCCGACCATCCATTTGGAGCATTCTGTTTAGTCAAGTTC
GTTAATTGGGAACCTATAGAAGAGAATCCTTGACAAATCAACGGTAGTAGCTGGCTAAACCAACAAAGCTCCTTATTTCTGACACATTAGTAGGCCTTAC
CCAATTTCTCACTGTTTCAATCATAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAAAAGGACACTGAATCTAGCAAAAACTCACAC
TTGGAGAATTTGGCATAAAGCCTTTTCTCCCTTAACACATCCAACACAACTCCCAAATTCTCCTCATGTTCCTTCTTACTCTTGGAGTATATCAGTATAT
CATTAATAAATATGATCACAAAGAGATCCAGATATGGCTTAAAAATCTCGTTCATCAAGCTCATGAAAGCAGCAGGGGCATTCGTAAGACCAAAAGACAT
TACTAGAAATTCGTAATGCCCATACCTGGTTCGAAAAGCAGTCTTTGGCACATCCGTTGCCCATATTTTCAGTTGATGATTACCGGATCTCAAGTTAATC
TTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAATGGGATACTTGTTCTTAATTGTTACCTTGTTCAACTGCCGGTAGT
CTATGCACATCCGAAAACTCCCATCCTTCTTCTTTACAAATAACACCGGAGCACCCTAAGGGGATGCACTTGGTCTAATGAAACCTTTACTTAACA
>LE_HBa0080E24_T7_20591 (trimmed for quality and cloning vector)
AGCTTTCTTCACATTCGTCCGACCATCCATTTGGAGCATTCTGTTTAGTCAAGTTCGTTAATTGGGAACCTATAGAAGAGAATCCTTGACAAATCAACGG
TAGTAGCTGGCTAAACCAACAAAGCTCCTTATTTCTGACACATTAGTAGGCCTTACCCAATTTCTCACTGTTTCAATCATAGAAGGATCCACCATCACTC
CATCCTTAGAAACCACGTGCCCCAAAAAGGACACTGAATCTAGCAAAAACTCACACTTGGAGAATTTGGCATAAAGCCTTTTCTCCCTTAACACATCCAA
CACAACTCCCAAATTCTCCTCATGTTCCTTCTTACTCTTGGAGTATATCAGTATATCATTAATAAATATGATCACAAAGAGATCCAGATATGGCTTAAAA
ATCTCGTTCATCAAGCTCATGAAAGCAGCAGGGGCATTCGTAAGACCAAAAGACATTACTAGAAATTCGTAATGCCCATACCTGGTTCGAAAAGCAGTCT
TTGGCACATCCGTTGCCCATATTTTCAGTTGATGATTACCGGATCTCAAGTTAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATC
AATGCGAGGAATGGGATACTTGTTCTTAATTGTTACCTTGTTCAACTGCCGGTAGTCTATGCACATCCGAAAACTCCCATCCTTCTTCTTTACAAATAAC
ACCGGAGCACCCTAAGGGGATGCACTTGGTC

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
0.971539
Expected error %
0.662104
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT38745.1| Score 342 E Value 4e-96 Identity 75.80% Align. Length 727bp (99.45%) Frame 3
putative polyprotein, 3'-partial [Solanum demissum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT38744.1| Score 331 E Value 2e-93 Identity 74.00% Align. Length 727bp (99.45%) Frame 3
putative gag-pol polyprotein [Solanum demissum]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0080E24
Clone
Clone name
hba-80e24
LE_HBa0080E24
P080E24
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found