Clone Read LE_HBa0084G05_SP6_22184

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0084G05_SP6_22184
Primer
SP6
ID from Seq. Facility
LE_HBa_084_G05-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
670 trimmed for vector and quality, 829 raw
Genbank Accession
DU038803
Sequence
>LE_HBa0084G05_SP6_22184 (raw untrimmed)
ACGGCTTAATGTCGATTGGGTATATGCACTGCCACATTTTTGCTCTTGTAGATGTCTGGCTGGAGAACCGAGACCTTCTTCTATTCTGGCAAGTAAAACC
AGTTGTTCATGTATTCCAGGTCTGCTTCTGTTACTAAAGTTATGTTACTCAAAATCCCAAGCCCTCTTGGCATTCCTGTTTCCTACCCTAGCTGGACAGA
TAAACCCTAAAGGATTGTACAGGAAACACTAGAAGTTGCTAAAATTTTTATCAAGTATTGAAACTGAATTTGGTACTCCTACCTGAGCCCAATGTAACAT
AAGTTCCATCTGTTCCATTGTTGTAGTTATCATTATATTTAACTGTTTCTATGAAAGGGTTATTTGATGTCTTGTTGTTCATACCCTCTTTTCCAAGTAA
ACAACTGAAAAGAAGAAAAGAGAGGAAATAAGTAAAAAAGAAACGAGGAGTAATTGGAGGTGGAGTGAGCAATTGAGCATAGCCAACACTTTACACCTAA
TTTTTTACAGTTGATTTGTTCAATTTTATGACTTCTCTTCTATTTGAATTTGAATTGGACATTTCCTTTGTCAGCTTAGCGAGGAAGGACCATGTGAAGA
ATTAAGTGGGGATGGACAGCTTTCTACCTTTAATGAATGGATTCTTCCTGCAAAAGAATTTAATGGAATGTGGGAAAGGTGTGTCACTTGCTGGCTGAAA
AGAACCTAGATTTTTCAAGGAACCCAGATGTGATTTATCTTTTTATTTCTACAGCTTAATATACCAATCTGGTCTCAAGCAAAGATTGTTGCCAAATGCT
GCAAGTTGCTTTGCTTTTCACTGAAAAAA
>LE_HBa0084G05_SP6_22184 (trimmed for quality and cloning vector)
ATGCACTGCCACATTTTTGCTCTTGTAGATGTCTGGCTGGAGAACCGAGACCTTCTTCTATTCTGGCAAGTAAAACCAGTTGTTCATGTATTCCAGGTCT
GCTTCTGTTACTAAAGTTATGTTACTCAAAATCCCAAGCCCTCTTGGCATTCCTGTTTCCTACCCTAGCTGGACAGATAAACCCTAAAGGATTGTACAGG
AAACACTAGAAGTTGCTAAAATTTTTATCAAGTATTGAAACTGAATTTGGTACTCCTACCTGAGCCCAATGTAACATAAGTTCCATCTGTTCCATTGTTG
TAGTTATCATTATATTTAACTGTTTCTATGAAAGGGTTATTTGATGTCTTGTTGTTCATACCCTCTTTTCCAAGTAAACAACTGAAAAGAAGAAAAGAGA
GGAAATAAGTAAAAAAGAAACGAGGAGTAATTGGAGGTGGAGTGAGCAATTGAGCATAGCCAACACTTTACACCTAATTTTTTACAGTTGATTTGTTCAA
TTTTATGACTTCTCTTCTATTTGAATTTGAATTGGACATTTCCTTTGTCAGCTTAGCGAGGAAGGACCATGTGAAGAATTAAGTGGGGATGGACAGCTTT
CTACCTTTAATGAATGGATTCTTCCTGCAAAAGAATTTAATGGAATGTGGGAAAGGTGTGTCACTTGCTG

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.960991
Expected error %
0.416318
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At4g24710.1 Score 64 E Value 7e-11 Identity 22.80% Align. Length 113bp (16.87%) Frame 1
68417.m03536 AAA-type ATPase family protein similar to HPV16 E1 protein binding protein [Homo sapiens] gi|2232019|gb|AAB64095; contains Pfam domain, PF00004: ATPase, AAA family ('A'TPases 'A'ssociated with diverse cellular 'A'ctivities)
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0084G05
Clone
Clone name
hba-84g5
LE_HBa0084G05
P084G05
Clone type
BAC
Contamination
none
Estimated length
127,405
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found