Clone Read LE_HBa0006A24_SP6_2350

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0006A24_SP6_2350
Primer
SP6
ID from Seq. Facility
LE_HBa_006_A24-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
764 trimmed for vector and quality, 924 raw
Genbank Accession
DU022574
Sequence
>LE_HBa0006A24_SP6_2350 (raw untrimmed)
CCCCCTCCCTCATGCTGTACCCATGGAAGCAGTTCTCATTGCAAGTGAGTGTGGATTCCAAATTGAAAGGAAACATTTCACGGGTAACGTGCAAGCTGGA
CATTGAAAAAGCATATGATCATGTAAATTGGGGTTTCCTACTAAACACCTTCAGACAAATGGATTTTGGAGAAAGATGGGTGGCATGGATAAAATTTTGC
ATAAGCACGGTGAGATTCTCCATTCTTGTAAATGGAGAACCGGTGAGTTCTTTCTCTTCAGGAAGGGGAATCAGACAAGGTGATCCTCTTTCACCCTTTC
TATTTATCCTGGTAATTGAGGGATTTGATAGTTTGATAAGGATTGCTACTCAAAACAGGTGGATCAGAGGTTTCCAAACTAGTGAAAACAATGGTGATAT
TCAAGAGATCTTCCATCTACTCTATGCAGATGACACTGTGATTTTCAATGAGTCATAGGAGGAGCAATTTAGATTCATCAAACTAATATTGTTGTTCTTT
GAAGCTTGTACATGTTTGAAAGTTAACTAGGGAAAAAACAGTTTATATCCTATTAAGGATGAGACAAACATCAAAAGTCTAGCTGACATTTTGGGTTGCG
GAGTGGGAAATTGCCCACAACTTATTCGGGTATTATGAAATACATACAAAGATTTGAAGATATGGGACAACATATTTGAGAAGTTTGAAAAGAGACTAGC
TAGATGGAAGGCTCAATACATTTCTTTTGGTGGCAGACACATTCGTATCAACTCCGTTTTAGACTCTCTCCCAACATATGGTAGGTCTCTTTACACTATA
CCGGCAGAAGTGGTTAAGAAATTGGACAAACTAGGAGGGATTTCCTTTGGCATGGTTGCAAAAGTACAAAGGATACATGGTCCAGTGGGCGACAGTTTGC
ATAAAAAGATAAGGTACATGGTCA
>LE_HBa0006A24_SP6_2350 (trimmed for quality and cloning vector)
AGTGAGTGTGGATTCCAAATTGAAAGGAAACATTTCACGGGTAACGTGCAAGCTGGACATTGAAAAAGCATATGATCATGTAAATTGGGGTTTCCTACTA
AACACCTTCAGACAAATGGATTTTGGAGAAAGATGGGTGGCATGGATAAAATTTTGCATAAGCACGGTGAGATTCTCCATTCTTGTAAATGGAGAACCGG
TGAGTTCTTTCTCTTCAGGAAGGGGAATCAGACAAGGTGATCCTCTTTCACCCTTTCTATTTATCCTGGTAATTGAGGGATTTGATAGTTTGATAAGGAT
TGCTACTCAAAACAGGTGGATCAGAGGTTTCCAAACTAGTGAAAACAATGGTGATATTCAAGAGATCTTCCATCTACTCTATGCAGATGACACTGTGATT
TTCAATGAGTCATAGGAGGAGCAATTTAGATTCATCAAACTAATATTGTTGTTCTTTGAAGCTTGTACATGTTTGAAAGTTAACTAGGGAAAAAACAGTT
TATATCCTATTAAGGATGAGACAAACATCAAAAGTCTAGCTGACATTTTGGGTTGCGGAGTGGGAAATTGCCCACAACTTATTCGGGTATTATGAAATAC
ATACAAAGATTTGAAGATATGGGACAACATATTTGAGAAGTTTGAAAAGAGACTAGCTAGATGGAAGGCTCAATACATTTCTTTTGGTGGCAGACACATT
CGTATCAACTCCGTTTTAGACTCTCTCCCAACATATGGTAGGTCTCTTTACACTATACCGGCAG

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.958533
Expected error %
0.126886
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAP52238.1| Score 154 E Value 3e-36 Identity 12.90% Align. Length 725bp (94.90%) Frame 3
putative retroelement [Oryza sativa (japonica cultivar-group)] ref|NP_919951.1| putative retroelement [Oryza sativa (japonica cultivar-group)] gb|AAN04214.1| Putative retroelement [Oryza sativa (japonica cultivar-group)]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAY23271.1| Score 153 E Value 5e-36 Identity 12.80% Align. Length 728bp (95.29%) Frame 3
retrotransposon protein, putative, unclassified [Oryza sativa (japonica cultivar-group)]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0006A24
Clone
Clone name
hba-6a24
LE_HBa0006A24
P006A24
Clone type
BAC
Contamination
none
Estimated length
112,624
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found