Clone Read LE_HBa0086D22_SP6_23610

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0086D22_SP6_23610
Primer
SP6
ID from Seq. Facility
LE_HBa_086_D22-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
595 trimmed for vector and quality, 860 raw
Sequence
>LE_HBa0086D22_SP6_23610 (raw untrimmed)
AAAAAAAAAAGGTTTTTCTTTTNCCTATGTATTNNATANATNNANTGTACTCNNTGCATATTTTGTGCTANTAACTGATGTAAATTCTTCTTTTAAAGGT
ATTTGGANTTAGGGNAAAAAGNATGGACACCTTTAGAAAAAGGAATAATGTAGNTAAAGGAANAATATAAAATAAGGGATGAGGATTGCGTAAANNATTG
GAAGAGTCGNNGAATGGNTTGAANTNGNNTAGTGTTNNAGTGTGNNAAGNNNTGAATAAGAAAATNAAGTAGGGGATAGGAAGGAGAAATNGGGGAGTNT
TTGAANAATTNNGNGATGNAAATNTTTATTGGNNAAAGTTANAGAANTTTTATATGTTGAAGGGNAAAGNAAAAAGGAGATAAAANTAANNAAAGGGNGG
ATTGNNAAGTATATTGTNTATNTNTAATAATTGNNATGAATGATNTTTNATATTAGAATTTTTTATAANTAGAAATAGGTTTTTAAATTTTTAGTTTANT
ATNAATTAATTAANTTATNTATAAANTTTTNAATTTAGANATTGAGTAATTAGATTGGAATTATNATTNTAATTTTGAANATTGAATTAAGTTTTTTNTT
AGATTTTGAAGAATTTTAATTTNAAGAAATTGGAAGTTGGTGTTGAAGATTTTTNATTTTAGATTTGTGTAAAAATAATATTAATTGTANTTAGTTTATG
AAAATATTAGTTGGTATTAGTTTNTTANTTTTTTTTATGTATAGATAAAAATATAATTTTGGGGGGTGATTATGTAATAATGGGTTGATATATTGGTGAG
TTTGGTAATTATTAGTTTATTTGTTGTGTAAATTGGATTTATTTAGTAATTTTGGTGAAT
>LE_HBa0086D22_SP6_23610 (trimmed for quality and cloning vector)
TGCATATTTTGTGCTANTAACTGATGTAAATTCTTCTTTTAAAGGTATTTGGANTTAGGGNAAAAAGNATGGACACCTTTAGAAAAAGGAATAATGTAGN
TAAAGGAANAATATAAAATAAGGGATGAGGATTGCGTAAANNATTGGAAGAGTCGNNGAATGGNTTGAANTNGNNTAGTGTTNNAGTGTGNNAAGNNNTG
AATAAGAAAATNAAGTAGGGGATAGGAAGGAGAAATNGGGGAGTNTTTGAANAATTNNGNGATGNAAATNTTTATTGGNNAAAGTTANAGAANTTTTATA
TGTTGAAGGGNAAAGNAAAAAGGAGATAAAANTAANNAAAGGGNGGATTGNNAAGTATATTGTNTATNTNTAATAATTGNNATGAATGATNTTTNATATT
AGAATTTTTTATAANTAGAAATAGGTTTTTAAATTTTTAGTTTANTATNAATTAATTAANTTATNTATAAANTTTTNAATTTAGANATTGAGTAATTAGA
TTGGAATTATNATTNTAATTTTGAANATTGAATTAAGTTTTTTNTTAGATTTTGAAGAATTTTAATTTNAAGAAATTGGAAGTTGGTGTTGAAGA

This is probably not a useful sequence.

Problems:
  • High predicted error rate
 Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.957125
Expected error %
20.704
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0086D22
Clone
Clone name
hba-86d22
LE_HBa0086D22
P086D22
Clone type
BAC
Contamination
none
Estimated length
80,188
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found