Clone Read LE_HBa0116J12_T7_253489

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0116J12_T7_253489
Primer
T7
ID from Seq. Facility
LE_HBa_116_J12-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
578 trimmed for vector and quality, 958 raw
Sequence
>LE_HBa0116J12_T7_253489 (raw untrimmed)
ACTCTAGAGTCGACTGCAGGCATGCAAGCTTGAATTTGAAGATCTAACTAGAGTTGGGCTCACGGCACACCTCAAGGAGAGGTCAAAATCAGAAAGCATT
ATATGGCCATCTTCTCGAACCAAAACATTCTCTGGTTTAAGGTCTCTGTAAATGATTCCAAGCATGTGCAAGTACTCTAGAGCAAGAAGGACTTCAGCCA
CGTAAAACCTATATTCCCAATAAAAAGAATCAATAGTAAAAATCATAACAAAACTCAATCATAAGTCATAACTACGTAACTCCAACCTAAACTATCATTG
ATTACGGTAGATGTAACGTCTCAAGTCTATCTGAATGGACTTATCTTTGGTTCCTACGAAACAAACTACTCGGTTATATTCAATTCCCTTGGCCCCAGCT
AACAAAATTTTAGAACATTATACCAGTCAGTTTCCAAATGACAGTGATGAATACGAGCATGCAACTGGAAAACAATATTTGCTACTGGGACTGCACACAA
CAAGAAAGGTCTGAACTCAATGTTGAGAAAAATTACAAAAGGCTAGGAAATAAGCAACATGTTTAATTGAAGAGATATCAAGGCAAACATACAGATACGG
ATCTAATAAACAGCTGGGGTAAAAAAGTCAACAGCTATAAGCACAGAGCAGTGGATCTCACTCATCATTGTTTGAGCCCAATGCCTNAAGAGGTGAAACA
GTTAGAAGAAAGGCATATATGCACCAGGATCTTCCTTGCAAAAAAAATTAAAGTCATTTCCCCTATTTTGAAATTTTTAGAACCCTTAAAGCCTTACCAT
TGATGGGAACCGGATTGGGTTTAAACAGAAAACAAATTTTAAAATTTCCTTTTTTCCTTAAAGATCTCCACCAAAAGTTTGAAAATTTTTGAAACCAAAG
CCCCAAAAGGGGGAAATTTAAATTTGGGGAACAAACACTAAACCGTGAAACCCTTTCC
>LE_HBa0116J12_T7_253489 (trimmed for quality and cloning vector)
CTGCAGGCATGCAAGCTTGAATTTGAAGATCTAACTAGAGTTGGGCTCACGGCACACCTCAAGGAGAGGTCAAAATCAGAAAGCATTATATGGCCATCTT
CTCGAACCAAAACATTCTCTGGTTTAAGGTCTCTGTAAATGATTCCAAGCATGTGCAAGTACTCTAGAGCAAGAAGGACTTCAGCCACGTAAAACCTATA
TTCCCAATAAAAAGAATCAATAGTAAAAATCATAACAAAACTCAATCATAAGTCATAACTACGTAACTCCAACCTAAACTATCATTGATTACGGTAGATG
TAACGTCTCAAGTCTATCTGAATGGACTTATCTTTGGTTCCTACGAAACAAACTACTCGGTTATATTCAATTCCCTTGGCCCCAGCTAACAAAATTTTAG
AACATTATACCAGTCAGTTTCCAAATGACAGTGATGAATACGAGCATGCAACTGGAAAACAATATTTGCTACTGGGACTGCACACAACAAGAAAGGTCTG
AACTCAATGTTGAGAAAAATTACAAAAGGCTAGGAAATAAGCAACATGTTTAATTGAAGAGATATCAAGGCAAACATA

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.952563
Expected error %
0.266131
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At3g27580.1 Score 113 E Value 8e-26 Identity 29.20% Align. Length 191bp (33.04%) Frame 1
68416.m03446 protein kinase, putative similar to serine/threonine protein kinase [Arabidopsis thaliana] gi|217861|dbj|BAA01715
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At3g52890.2 Score 112 E Value 1e-25 Identity 29.90% Align. Length 176bp (30.45%) Frame 1
68416.m05829 protein kinase (KIPK) identical to protein kinase KIPK (KCBP-interacting protein kinase) [Arabidopsis thaliana] gi|7716430|gb|AAF68383
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
emb|CAA62476.1| Score 124 E Value 2e-27 Identity 32.30% Align. Length 191bp (33.04%) Frame 1
stpk1 protein kinase [Solanum tuberosum] pir||T07670 probable protein kinase PK1 - potato
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
pir||A45510 Score 117 E Value 1e-25 Identity 31.70% Align. Length 182bp (31.49%) Frame 1
probable protein kinase - maize (fragment) gb|AAA33509.1| protein kinase
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0116J12
Clone
Clone name
hba-116j12
LE_HBa0116J12
P116J12
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found