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Clone Read LE_HBa0125M07_T7_254159

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0125M07_T7_254159
Primer
T7
ID from Seq. Facility
LE_HBa_125_M07-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
639 trimmed for vector and quality, 973 raw
Genbank Accession
DU081786
Sequence
>LE_HBa0125M07_T7_254159 (raw untrimmed)
NCCTATGTCGGGGATCTCTGAGTCGACCTGCAGGCATGCAAGCTTCACTAGGTGAAGAAGGCATTGATTTGCCTAGATGGGTCCAAAGTGTTGTAAGAGA
AGAATGGACCGCGGAGGTGTTTGATGTTGAACTAATGCGATACCATAATGTGGAAGAAGAGATGGTACAACTACTTCAGATAGGTATGGCATGTGTTGCT
ACCATGCCAGACCAACGACCTGCCATGACCGAGGTGGTTAGGATGATCGAAGAAATGAATCGTGGTGATACAGATGATGGTCTTAGACAATCCTCCGATG
ATCCCTCTAAAGGTTCTGAAGGCCAAACACCTCAGGAGTCTAGAGGCTCACCTCATGGTGTTACACCATAAAAAGAAAATTAATCATAAAAATGGATGGC
TTGATTTGTCAAAAATTCTCAGAAAAGCCTAAAGTAAATTGTATTAGATTCTTAGGTGGGGAGCCTTTTTATGTGTTTTTATTTTATTTCATTTTTTTTT
TTATCTTCTTGAAATTATTATTTTGAGAAAATTTGTGGAATGATTTTTACAGATGGTTAGTTGAGAAATTTGAATATTTCAGTTGGAAGTGATTGGGAAA
TTGACCTTGTGAGTTGTTTAAAAAAAATCATGTGATTCTTTTGGTATAAAAAGCTGTTGATTTACACATCCCATTATTAGTTTAATATTTGTCAACTAGC
ATTTCAAAGGGTACATCTTGGAATTCCAAGAATTTTGGAGAGGGTGGAGTACTAATAATACCTTTATATAAAAATTGGTGGATTGGGTCTGACCGCAAGG
GTGTAAACCCATGCCCTTCCTGGACTCCAATGAATTTTTTTAATTTCCAAATTTTTTATTCCAAATTCGAAATCATGTAAAGTCCTATTTAATAAAATTT
ATATCGTTTATGATTTGCCGGAAAAAAACCCCCACCTGAAGATTTTTTTAATAATGAATAAATTTTGGTCTCG
>LE_HBa0125M07_T7_254159 (trimmed for quality and cloning vector)
GTCGACCTGCAGGCATGCAAGCTTCACTAGGTGAAGAAGGCATTGATTTGCCTAGATGGGTCCAAAGTGTTGTAAGAGAAGAATGGACCGCGGAGGTGTT
TGATGTTGAACTAATGCGATACCATAATGTGGAAGAAGAGATGGTACAACTACTTCAGATAGGTATGGCATGTGTTGCTACCATGCCAGACCAACGACCT
GCCATGACCGAGGTGGTTAGGATGATCGAAGAAATGAATCGTGGTGATACAGATGATGGTCTTAGACAATCCTCCGATGATCCCTCTAAAGGTTCTGAAG
GCCAAACACCTCAGGAGTCTAGAGGCTCACCTCATGGTGTTACACCATAAAAAGAAAATTAATCATAAAAATGGATGGCTTGATTTGTCAAAAATTCTCA
GAAAAGCCTAAAGTAAATTGTATTAGATTCTTAGGTGGGGAGCCTTTTTATGTGTTTTTATTTTATTTCATTTTTTTTTTTATCTTCTTGAAATTATTAT
TTTGAGAAAATTTGTGGAATGATTTTTACAGATGGTTAGTTGAGAAATTTGAATATTTCAGTTGGAAGTGATTGGGAAATTGACCTTGTGAGTTGTTTAA
AAAAAATCATGTGATTCTTTTGGTATAAAAAGCTGTTGA

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.957448
Expected error %
0.195201
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At2g26730.1 Score 184 E Value 4e-47 Identity 28.20% Align. Length 329bp (51.49%) Frame 1
68415.m03206 leucine-rich repeat transmembrane protein kinase, putative
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At5g58300.1 Score 119 E Value 1e-27 Identity 21.00% Align. Length 275bp (43.04%) Frame 1
68418.m07298 leucine-rich repeat transmembrane protein kinase, putative
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAK92807.1| Score 184 E Value 2e-45 Identity 28.20% Align. Length 329bp (51.49%) Frame 1
putative receptor protein kinase [Arabidopsis thaliana]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAB95307.1| Score 184 E Value 2e-45 Identity 28.20% Align. Length 329bp (51.49%) Frame 1
putative receptor-like protein kinase [Arabidopsis thaliana] gb|AAX22262.1| At2g26730 [Arabidopsis thaliana] pir||B84664 probable receptor-like protein kinase [imported] - Arabidopsis thaliana ref|NP_180241.1| leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0125M07
Clone
Clone name
hba-125m7
LE_HBa0125M07
C03HBa0125M07
P125M07
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found