Clone Read LE_HBa0140A10_T7_254295

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0140A10_T7_254295
Primer
T7
ID from Seq. Facility
LE_HBa_140_A10-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
581 trimmed for vector and quality, 954 raw
Genbank Accession
DU082284
Sequence
>LE_HBa0140A10_T7_254295 (raw untrimmed)
CTGTCGGGGATCTCTGAGTCACCTGCAGGCATGCAAGCTTCATATTTGATATTGAGGAATTTCATTCTAAATCACACTTAACTTGATGAACGTCAAAAAT
CATGCGACACTGAAAACATGCCTATGCTACACAAAAACAGCAACAAAAAATGCAACATAACTTCATTTTAACTCACATAGTGCTATTATAAGACATACGA
TTCGGGACTTTTTTCTTCAAATCCACTAAAGCGCTTACACTTATAGTTTATTAAACATAAATTAAACTTAGGAAGATTATATCTAACCTCATAAATAACA
TCTTGTTGGCCTTAAGATTTGAAACGAATGAAGCCCAACATAATTTCAAAGGGACTTGCCACTATGCCATCTACTTCTCTACATACCCCTTCAGCCTTAA
TATTGTCTCCTACGGGAGTACTAACTAGAAACTGTTCATGTAAGATCTCAGAAAGTAAGTCAAATTTATTAGCCACAAAAAGAGCTTCCATGAACATGCT
AGATCCTGGATCTAATAATGCATACACACGAAAGGATAAGATAAGAGAGTTACCATTATCCACATCTGTGGACTTCTCTTGTTCCTCTCTTAATTTGAAT
ACATAGAACTGATTTCTTGGGAGGTTCGGCTACACAATTTGGCCGAGGCTGAGCATCTGCCTTGGCCTGTAGAAATTGAACCACTCCCTTCTCATTTTTA
CCCAATTTATTGGGAAATTGAAGCCTTACTACCCCTAATATCTATAAATTATTGGAGCCATACACTTTATGAAGCAAATGCATGTCTAAAGTCATAATTC
TTGGGTTGAAAATCAGCCCAACTTACCCTTCGCCCTCCTCATTAAACTCCCAGAAAGGTTTTTAAAAAATACCATGCTATACCCTCCAGGTAAAACCTCA
AATCTTACCCCCAAGTTTTTTTTTCAAATTGGGCAAATCCCCCTATGGCCCCTG
>LE_HBa0140A10_T7_254295 (trimmed for quality and cloning vector)
CTGCAGGCATGCAAGCTTCATATTTGATATTGAGGAATTTCATTCTAAATCACACTTAACTTGATGAACGTCAAAAATCATGCGACACTGAAAACATGCC
TATGCTACACAAAAACAGCAACAAAAAATGCAACATAACTTCATTTTAACTCACATAGTGCTATTATAAGACATACGATTCGGGACTTTTTTCTTCAAAT
CCACTAAAGCGCTTACACTTATAGTTTATTAAACATAAATTAAACTTAGGAAGATTATATCTAACCTCATAAATAACATCTTGTTGGCCTTAAGATTTGA
AACGAATGAAGCCCAACATAATTTCAAAGGGACTTGCCACTATGCCATCTACTTCTCTACATACCCCTTCAGCCTTAATATTGTCTCCTACGGGAGTACT
AACTAGAAACTGTTCATGTAAGATCTCAGAAAGTAAGTCAAATTTATTAGCCACAAAAAGAGCTTCCATGAACATGCTAGATCCTGGATCTAATAATGCA
TACACACGAAAGGATAAGATAAGAGAGTTACCATTATCCACATCTGTGGACTTCTCTTGTTCCTCTCTTAATTTGAATACA

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.947447
Expected error %
0.0965967
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT38744.1| Score 70 E Value 3e-11 Identity 17.60% Align. Length 215bp (37.01%) Frame 3
putative gag-pol polyprotein [Solanum demissum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT38724.1| Score 70 E Value 3e-11 Identity 17.60% Align. Length 215bp (37.01%) Frame 3
putative retrotransposon protein [Solanum demissum]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0140A10
Clone
Clone name
hba-140a10
LE_HBa0140A10
P140A10
Clone type
BAC
Contamination
none
Estimated length
104,950
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found