Clone Read SL_EcoRI0058J06_SP6_257171

Sequence Read 
Read Class
BAC ends
Read ID
SL_EcoRI0058J06_SP6_257171
Primer
SP6
ID from Seq. Facility
SL_EcoRI_058_J06-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
581 trimmed for vector and quality, 924 raw
Genbank Accession
CZ955670
Sequence
>SL_EcoRI0058J06_SP6_257171 (raw untrimmed)
TTCCCTAAAAGGGGGGAACACNACGNNCTTTTCCATTGGTCNCTTCTAAGAGAGGGGATAGGTAGGACTGCAAGATGATGTTAGATGAAAATTCTAACAT
ATCCAATAAATGCCTCCCAACTGACTGGAACTAGTACCAAGATTCACTAAATCGCCTTATCATAATTAAAATATCAGCAAACTTAAGTAGTTGACGATTT
ATAAGATCCGTTCAATATATATGAACCAAGACACCTCAACAAAGCTGACCTTCAAGTTCAATGTCATTTTCATGTGCAGCTTCTAACATAGACATTCCAA
CAGGGACCTTGATATGGTTCTCTTCACCATCCTTGTCAACAAAAGTTACAGATATTCTGCAAATCACAAAGAGACCATAGAAAAGTAAGTTTGTGGTAAC
TAAATCAGTGTGGCATAATCTCAGACATTCCATCAGCTAAATTGTAGAGGCTAACTATGATAAGCTAATGATGGATGAAATCAAGGAGATAGCACAAAGT
TCAAAAATTACCATCATAATTCATATAGAAAAAGGTTATTAAATATCTGATACATAATCTATATGAGGAAGTGCAATATATGTCAGACATAAGTTTAAGG
AGGAAATGTTGGATTGTAAACAAAACTTCCCCTGGTGACTTCATGCATTGGACCTAGAAAAGCCAATGAGATATTTGTCCAAAATTTTAGGTAGTTTTTT
TAAATAATAGATATAGATAAGTTGGGAGTGAACGTGAATTATTTTCTGCATCTAAAAGGGGGAAAGAACAAATCTGATTTTTCCAGGATCATTTTGGATC
CCGTTAGAATTAAATAAAAATCCGAACATTTCCTTGATCTCTATCTATAAAAGTTTAATTAAAGAAGGGCCATCTTTAAAAATTTGGGGACCCCTTCTTT
CCGCCCAAATAAACTTAGGGACCC
>SL_EcoRI0058J06_SP6_257171 (trimmed for quality and cloning vector)
GGATAGGTAGGACTGCAAGATGATGTTAGATGAAAATTCTAACATATCCAATAAATGCCTCCCAACTGACTGGAACTAGTACCAAGATTCACTAAATCGC
CTTATCATAATTAAAATATCAGCAAACTTAAGTAGTTGACGATTTATAAGATCCGTTCAATATATATGAACCAAGACACCTCAACAAAGCTGACCTTCAA
GTTCAATGTCATTTTCATGTGCAGCTTCTAACATAGACATTCCAACAGGGACCTTGATATGGTTCTCTTCACCATCCTTGTCAACAAAAGTTACAGATAT
TCTGCAAATCACAAAGAGACCATAGAAAAGTAAGTTTGTGGTAACTAAATCAGTGTGGCATAATCTCAGACATTCCATCAGCTAAATTGTAGAGGCTAAC
TATGATAAGCTAATGATGGATGAAATCAAGGAGATAGCACAAAGTTCAAAAATTACCATCATAATTCATATAGAAAAAGGTTATTAAATATCTGATACAT
AATCTATATGAGGAAGTGCAATATATGTCAGACATAAGTTTAAGGAGGAAATGTTGGATTGTAAACAAAACTTCCCCTGGT

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.938967
Expected error %
0.464106
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At4g21090.2 Score 69 E Value 2e-12 Identity 28.80% Align. Length 110bp (18.93%) Frame 2
68417.m03050 adrenodoxin-like ferredoxin 1 similar to SP|P10109 Adrenodoxin, mitochondrial precursor (Adrenal ferredoxin) (Hepatoredoxin) from Homo sapiens, SP|P29330 Adrenodoxin (Adrenal ferredoxin) from Ovis aries; contains Pfam profile: PF00111 2Fe-2S iron-sulfur cluster binding domains; identical to GI:28192428
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At4g21090.1 Score 69 E Value 2e-12 Identity 28.80% Align. Length 110bp (18.93%) Frame 2
68417.m03049 adrenodoxin-like ferredoxin 1 similar to SP|P10109 Adrenodoxin, mitochondrial precursor (Adrenal ferredoxin) (Hepatoredoxin) from Homo sapiens, SP|P29330 Adrenodoxin (Adrenal ferredoxin) from Ovis aries; contains Pfam profile: PF00111 2Fe-2S iron-sulfur cluster binding domains; identical to GI:28192428
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
dbj|BAD36068.1| Score 70 E Value 3e-11 Identity 24.40% Align. Length 155bp (26.68%) Frame 2
putative ferredoxin precursor [Oryza sativa (japonica cultivar-group)] dbj|BAD36440.1| putative ferredoxin precursor [Oryza sativa (japonica cultivar-group)]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAL82812.1| Score 69 E Value 8e-11 Identity 28.80% Align. Length 110bp (18.93%) Frame 2
adrenodoxin-like ferredoxin 1 [Arabidopsis thaliana] dbj|BAB86773.1| MFDX2 precursor [Arabidopsis thaliana] gb|AAO44070.1| At4g21090 [Arabidopsis thaliana] ref|NP_193841.2| adrenodoxin-like ferredoxin 1 [Arabidopsis thaliana] ref|NP_849415.1| adrenodoxin-like ferredoxin 1 [Arabidopsis thaliana]
Manual Annotations
No manual annotations found.
BAC 
Clone SL_EcoRI0058J06
Clone
Clone name
sle-58j6
SL_EcoRI0058J06
C01SLe0058J06
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato EcoRI BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pIndigoBAC-5
Accession
Heinz 1706
Restriction enzyme
EcoRI

Other Reads:
1 sequencing reads found