Clone Read LE_HBa0137E03_SP6_260367

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0137E03_SP6_260367
Primer
SP6
ID from Seq. Facility
LE_HBa_137_E03-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
554 trimmed for vector and quality, 860 raw
Genbank Accession
DU081997
Sequence
>LE_HBa0137E03_SP6_260367 (raw untrimmed)
AGAGAGCACAGGGTTTTATGGCAAAAGGCTTAATTTGTATGCGAATAATCTCCCTGATTATCAACAGAAGTCTCAGTCTGAACCTCTAAGTATCAAGAAT
GTTACACATGTTCCTCAACAAGAAGAAAGTTCAAAGCATGTATATTTCTTACATTATTTTTTATTCATTTTAAATTGAAATTGCTAATATTCATTACAAT
TTTTTTTCAATTTGTTTACAGTGATTGTGGTTTATACACATCTCTATTTGCCGAATACATGAGCAATGGTGTTTTTGATATGTCACATATTGATATTGAT
TCAACATATCATCGTCAAAGATATGCAACATTACTTTGGCATTATGGAAAATCAAAGAATGATGAAGGCACAATCAGTGAAAGTGAAGTTACAGGAACAG
TTGCTTGCAAGAAGGGTGGACCTCGAACTCATAAAGAACAAGTTATGGACACCACCAATTATCATACTCCAAAATTCCGTATCAGGAAGTAGAAATCTTC
ATGGCACATAGATAATTTAATTGAAAGACTTTTTTTTAATTTATGAACAATTATGTATTTTCCCAGTTTTTCTTATTATGAATACTTTTGATGGTTTTTA
TATAAATTATTTACTGGATTATTACTAAATGTGTCTCAGATTTTACCTATATTGAACACTGTATGAATTCATGTATTAAAAATCCTATTGAATTATGAAT
GTCTTAATTTAAATTTCAATATATAGTTACCTACTTAATATTGAAATTTTTCTTTTTATCTATCATACATTCACCTTTTTTCAGATTTACCATTCTTCAA
ACTTGTATTTTAATTTCTAAATTCCAGTCTCTCTAATTTCTCCTTTTGTAAACAATTTAT
>LE_HBa0137E03_SP6_260367 (trimmed for quality and cloning vector)
GCACAGGGTTTTATGGCAAAAGGCTTAATTTGTATGCGAATAATCTCCCTGATTATCAACAGAAGTCTCAGTCTGAACCTCTAAGTATCAAGAATGTTAC
ACATGTTCCTCAACAAGAAGAAAGTTCAAAGCATGTATATTTCTTACATTATTTTTTATTCATTTTAAATTGAAATTGCTAATATTCATTACAATTTTTT
TTCAATTTGTTTACAGTGATTGTGGTTTATACACATCTCTATTTGCCGAATACATGAGCAATGGTGTTTTTGATATGTCACATATTGATATTGATTCAAC
ATATCATCGTCAAAGATATGCAACATTACTTTGGCATTATGGAAAATCAAAGAATGATGAAGGCACAATCAGTGAAAGTGAAGTTACAGGAACAGTTGCT
TGCAAGAAGGGTGGACCTCGAACTCATAAAGAACAAGTTATGGACACCACCAATTATCATACTCCAAAATTCCGTATCAGGAAGTAGAAATCTTCATGGC
ACATAGATAATTTAATTGAAAGACTTTTTTTTAATTTATGAACAATTATGTATT

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.928862
Expected error %
0.181671
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAV31177.1| Score 139 E Value 3e-32 Identity 24.70% Align. Length 266bp (48.01%) Frame 3
hypothetical protein PGEC13.9 [Solanum tuberosum]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0137E03
Clone
Clone name
hba-137e3
LE_HBa0137E03
P137E03
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found