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Clone Read LE_HBa0090H01_T7_26065

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0090H01_T7_26065
Primer
T7
ID from Seq. Facility
LE_HBa_090_H01-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
417 trimmed for vector and quality, 902 raw
Sequence
>LE_HBa0090H01_T7_26065 (raw untrimmed)
GCTGACGCGGTCCCGGGGGGATCTCTAGAGTCGACCTGCAGGCATGCAAGCTTAACCCTAGGTTCATTGGACCTCTTTAGAGTTTGAGCCGAGTGGGAGA
GGTGGCCTATAAGTTGGTTTAGCCACCTAGTTTGTCGTCAATTCATCCTGTTTTCCATGTCTCTATGCTTCGGAAGTATATTCCGGATGAATCTCATGTG
ATTTCACTCGATTCTGTGGAGCTGGGTCCAGACTTGACATTTGAGGAGGAGCCTATAGCTATTTTGGATAGGCAAATTCGAAAGCTTAGGACCAAAGAGA
TTGCTTCAGTGAAGGTGCAATGGAAGCACCGATCAGTGGGAGAGGCAACTTGGGAGACAAGAGTCTCACATGCGTGCCAGATATCCTCAACTTTTTGAAG
CATCAGGTACTTTCTTTTACTTTATGTTCGAGGACGAACATGATTTTTAGTGGTGGATAATGTAATGATCCGTATTGTGATTTTTTGTCGACTATCAGAT
TTAGTGTGTTGGGGCGAAGAGGGGGATAGTCTGACGGCTAAACTGATAACCTTGTGAAGGTCATGTTAACTTTGTAGTTAGCGATCTCGTGTCGGCTCGA
TACTAACTCGCCCGAGACGAATGTTTTCTGATATGTTCCATATTGCTTGTTGGTTTATATTTAATTATATTGTTGTCTACGTATTTACTGCGAATTAGAT
ATATTTCGTTTGTAATTGTACGATCGAGCTGTATTTTGCCCGTATATTGTTCTATTTTTTTTATTTCATTATTTTATGCTATTATCAAATTAGTATCTAT
CACTATCATTTTAAATAATTTAATTATATTTTTTTAATTTCTCTGTGATGTTTCTTGTTTCAATTGTTTCTGTCTCTTTCCTTTGTTTATTGTGTATTGT
TT
>LE_HBa0090H01_T7_26065 (trimmed for quality and cloning vector)
AGCTTAACCCTAGGTTCATTGGACCTCTTTAGAGTTTGAGCCGAGTGGGAGAGGTGGCCTATAAGTTGGTTTAGCCACCTAGTTTGTCGTCAATTCATCC
TGTTTTCCATGTCTCTATGCTTCGGAAGTATATTCCGGATGAATCTCATGTGATTTCACTCGATTCTGTGGAGCTGGGTCCAGACTTGACATTTGAGGAG
GAGCCTATAGCTATTTTGGATAGGCAAATTCGAAAGCTTAGGACCAAAGAGATTGCTTCAGTGAAGGTGCAATGGAAGCACCGATCAGTGGGAGAGGCAA
CTTGGGAGACAAGAGTCTCACATGCGTGCCAGATATCCTCAACTTTTTGAAGCATCAGGTACTTTCTTTTACTTTATGTTCGAGGACGAACATGATTTTT
AGTGGTGGATAATGTAA

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
0.967313
Expected error %
0.577064
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT66771.1| Score 140 E Value 1e-32 Identity 20.00% Align. Length 344bp (82.49%) Frame 1
putative polyprotein [Solanum demissum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAV31169.1| Score 137 E Value 7e-32 Identity 21.40% Align. Length 308bp (73.86%) Frame 1
putative polyprotein [Solanum tuberosum]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0090H01
Clone
Clone name
hba-90h1
LE_HBa0090H01
C12HBa0090H01
P090H01
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found