Clone Read LE_HBa0006G11_SP6_2612

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0006G11_SP6_2612
Primer
SP6
ID from Seq. Facility
LE_HBa_006_G11-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
867 trimmed for vector and quality, 1038 raw
Genbank Accession
DU022807
Sequence
>LE_HBa0006G11_SP6_2612 (raw untrimmed)
AAAAAAAAAATGGTTTTCGGNTGGCTATTGATCAACAATTGTCCCCATTCATGAAAGAGCCTAGAGACCCCCATTTTTCTGCAGCTCTACGAGTCCTTCG
ATATATTTGAATTAATTCGAGTCAAGTATTGTTTCCATCAGGAGGCTCTTCTCTTTTCACAAGGTAGTTGTCGTCAGTGATGCTGATTGGGTTCCTGTAT
GGATACACACATATTGGTAAGTGGCTGCTTTATTTAACTTGAAGGCCCACTCATTTCATGAAAAATCAAAGAAACAACTCTTCATTTCCCTATTGTCGAT
AGAAGCCGAGTAAAACTTAATGAGACGTGTTGTAACAGAATTAATTTAGCTAAATCAACTCCTTATCGATCTTGGAAGTCTACTGGAGCTTCCTATTCCC
GTTAATTCCGATATTCAAGCGGCGATATATATTGCGGAGTATCCAGTCTTCCCCGAAAATAACAAAACGTGGAACTTGATTGCCCTTTTTTGTTGAAACA
ATACCCTTCTAGGATTATCCCTTTTTCTTATGTTCCCGCTTCATCTCAGCTTACAGATCTATTTACCAAGGCTCTTTCTGGACCTTCTCATCAAGTCATT
CTCCCCAAGTTGGACTCTTTCCACTCCTCTCCAACTTGAGGCGGGGTGTTAAGAATGAAAATCACTTGACACTATTGTTGTAACCCAATAAAATCAAGGA
TGAAGAAAAGAAAGAGAAGAAGAATAAGTCTGTTTGTTTTAACAGCATAGTTGTTACTCGATAAAATCAAGGATGCATAGATATCATACTTAGTACTTTT
CATCTGCTAATACAAATGTGTGCCTACATAATTTTACTTATGTAGGGCTTGACGATTTTTCTCCCTCCACTTGTGGCTAATTGATCCTATTGAGCTTTAA
AAACTTGGTAATCCTTATACTTCGAGGATGATATATTATAGTGTATGTATTTCATTTTTAAAATGATATGATGTATGATTTAATCTCATCCCTCTTTGAT
TTCTAATGGTTTGAAATTTATTAGACTCTGCTATTTCG
>LE_HBa0006G11_SP6_2612 (trimmed for quality and cloning vector)
AATTGTCCCCATTCATGAAAGAGCCTAGAGACCCCCATTTTTCTGCAGCTCTACGAGTCCTTCGATATATTTGAATTAATTCGAGTCAAGTATTGTTTCC
ATCAGGAGGCTCTTCTCTTTTCACAAGGTAGTTGTCGTCAGTGATGCTGATTGGGTTCCTGTATGGATACACACATATTGGTAAGTGGCTGCTTTATTTA
ACTTGAAGGCCCACTCATTTCATGAAAAATCAAAGAAACAACTCTTCATTTCCCTATTGTCGATAGAAGCCGAGTAAAACTTAATGAGACGTGTTGTAAC
AGAATTAATTTAGCTAAATCAACTCCTTATCGATCTTGGAAGTCTACTGGAGCTTCCTATTCCCGTTAATTCCGATATTCAAGCGGCGATATATATTGCG
GAGTATCCAGTCTTCCCCGAAAATAACAAAACGTGGAACTTGATTGCCCTTTTTTGTTGAAACAATACCCTTCTAGGATTATCCCTTTTTCTTATGTTCC
CGCTTCATCTCAGCTTACAGATCTATTTACCAAGGCTCTTTCTGGACCTTCTCATCAAGTCATTCTCCCCAAGTTGGACTCTTTCCACTCCTCTCCAACT
TGAGGCGGGGTGTTAAGAATGAAAATCACTTGACACTATTGTTGTAACCCAATAAAATCAAGGATGAAGAAAAGAAAGAGAAGAAGAATAAGTCTGTTTG
TTTTAACAGCATAGTTGTTACTCGATAAAATCAAGGATGCATAGATATCATACTTAGTACTTTTCATCTGCTAATACAAATGTGTGCCTACATAATTTTA
CTTATGTAGGGCTTGACGATTTTTCTCCCTCCACTTGTGGCTAATTGATCCTATTGAGCTTTAAAAA

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.968796
Expected error %
0.0449456
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAU89730.1| Score 56 E Value 1e-10 Identity 33.60% Align. Length 573bp (66.09%) Frame 1
putative polyprotein [Solanum tuberosum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
emb|CAB79159.1| Score 38 E Value 5e-11 Identity 38.20% Align. Length 573bp (66.09%) Frame 1
LTR retrotransposon like protein [Arabidopsis thaliana] emb|CAA18107.1| LTR retrotransposon like protein [Arabidopsis thaliana] pir||T49111 hypothetical retrovirus-related pol polyprotein AT4g22040 - Arabidopsis thaliana
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0006G11
Clone
Clone name
hba-6g11
LE_HBa0006G11
C01HBa0006G11
P006G11
Clone type
BAC
Contamination
none
Estimated length
109,958
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found