Clone Read LE_HBa0090I09_T7_26129

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0090I09_T7_26129
Primer
T7
ID from Seq. Facility
LE_HBa_090_I09-T7
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
2 trimmed for vector and quality, 1027 raw
Sequence
>LE_HBa0090I09_T7_26129 (raw untrimmed)
CCTCACAAAAATGATGTAGATGTGATACAGCATCATGCGTGCAGCATCGATATAAATCATATCAGAACGACAATCAGAAGNGGAATAAACCGCCACCGCT
ATAATCTNATTCTAATGATNCGCACAACTATACANCAATAAATATATTCCAAGTGCTTCCATCAGTCCTTANCTTATATACTGG
CCTTACTCCATTCATG
ACGTGGACTACGCTCTACTCTTTCTCGAGTTAGGTCATGCACATCTTACAATGGAATTCACAGAATGCGAAATCATGCAAATCTAACGTTGACATACAAT
CAATCATCTGGATGAACTTAGGCGTACTATATGCTAATGAATAACTACCTATACAGCGCTCTCTCACAACATACGTTACGGTTGCATAACATAGAGATAG
TATGTAGATACTTCTGGCTGATGAAAGAGGTGACTACTCTGATCGCTCATTATTTTGATTCACCATATCTACTTTCGTGAATGTATCAAATTCGTATATG
TNACGAGGGTTGCTACAACTGAGATGAGTTAACATCTAACATCACATACGCTATGTGCGAACACAGTGACACGATCAAGCAGTCTGGGCAAACCGAGACG
TTGTAACATCCGAATACGACGCATCATGGACTAGTGTGAAAATCATCTGAGTGCTTGCTGACGTGCTCTTCTTCACCACACATTCTTGACCAACCACTTA
TAAATNGACAATAACTTCTAATTATCTTCTCACATACCAAACATACACGATGTACAATGCGTACCTAACTGCATATACATTTAGCGAACAGTTCTTATGC
TGCCTCGCATCTATTCCTATCATATCTTACTCTTATCTCTATCATGACCGCCGCCTACCGCTGTCCGTCCACCTTACTCTCGACGCGTCAGTAGAAGCGC
ACATAAACACACACTTAATACATATCGATGCCATATTTCTATATTATACTTACATATAATATATCTCTAACACATACTACACTTGCTTTACTTATCATCT
ACACTCTCGATTCCTTCTCTTTNTTGT
>LE_HBa0090I09_T7_26129 (trimmed for quality and cloning vector)
CC

This is probably not a useful sequence.

Problems:
  • Short cloning insert
  • High predicted error rate
  • Low complexity
Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
5.19905
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0090I09
Clone
Clone name
hba-90i9
LE_HBa0090I09
C12HBa0090I09
P090I09
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found