Clone Read LE_HBa0165E14_SP6_262509

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0165E14_SP6_262509
Primer
SP6
ID from Seq. Facility
LE_HBa_165_E14-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
395 trimmed for vector and quality, 980 raw
Sequence
>LE_HBa0165E14_SP6_262509 (raw untrimmed)
CCCTGCGTTGTCTGTTTTAAGTGTGAGTTCTGGCTCAGTTTGGTAGCATTGTTGGGACATATAGTGTCCAAGGAGGGTATTATGGTGGACCCCAAGAAGA
TTGAGGCGGTTAGATATTGGGTCAGACCTGCTTCAGTCACTGAGATTCAGAGGTTTTTAGGCCTTACTGGTTATTATAGACGGTTTATAGAGGTTTTCTC
ATCCATTGCCTCACCATTAACTAGATTGACACAGAAGAAGGTGACTTTTCAATGGTCTAATGAGTGTGAAGTTAGTTTCCAAAAGCTCAAGACTTTACTG
ACTACTACTCCGATTTTGACCCTACCTATGGAGGGAGAAGGTTTTGTTGTATATTCTGATGCTTCTCGAATTGGTCTGGGTTGTGTATTGATGTAGAAGG
GAAAGGTGATAGCTTATGCGTCGAGGCAGTTGAAGGTTCATGAGAAGAACTACCCTATTCATGATTTAAAATTGGCGACTGTTGTGTTTGCATTGAAGAT
TTGGAGCCATTATCAGTATGATGTGCATTGGGGAGTGTTCACCGATCATCGAAGTCTCCCCTCTCTGATTCTATTAAGAGATCTCAATTTGAGGCCACTG
GAAATGGGTTGGAGTTGACTCTATGCTTACCAGATGACTATTTTTTATCCTCCAGGTAATGGATATGCTTACTAACTAACGCTTACATTTGCAATGGTTC
CTAGTTTGTGGTTTTCCTCCTCCTGTATCCCGCTTTCTTAACTCCCTTTACCTTTTTCTATCTTCTACCCTTCGTTTTAATCTATTCTTCTTTTTCTCGC
TTTTCTCACAAAATTTTTACACCGCGTTCTCCTTATTTTCCCCTCCCTCCGCCTTCCTTCTTGTCTTTTTAATTCTTTTCCTGTCTTCTACCTTATAACT
TCGCCTTGTCCTCCTTCATCTCCTTCTCGTCTGCTACCTGCTAATTTTATACCTTCATCATAATATTCATTTTCATTTCT
>LE_HBa0165E14_SP6_262509 (trimmed for quality and cloning vector)
ATTGTTGGGACATATAGTGTCCAAGGAGGGTATTATGGTGGACCCCAAGAAGATTGAGGCGGTTAGATATTGGGTCAGACCTGCTTCAGTCACTGAGATT
CAGAGGTTTTTAGGCCTTACTGGTTATTATAGACGGTTTATAGAGGTTTTCTCATCCATTGCCTCACCATTAACTAGATTGACACAGAAGAAGGTGACTT
TTCAATGGTCTAATGAGTGTGAAGTTAGTTTCCAAAAGCTCAAGACTTTACTGACTACTACTCCGATTTTGACCCTACCTATGGAGGGAGAAGGTTTTGT
TGTATATTCTGATGCTTCTCGAATTGGTCTGGGTTGTGTATTGATGTAGAAGGGAAAGGTGATAGCTTATGCGTCGAGGCAGTTGAAGGTTCATG

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.948348
Expected error %
0.600926
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT38745.1| Score 168 E Value 4e-41 Identity 21.00% Align. Length 389bp (98.48%) Frame 3
putative polyprotein, 3'-partial [Solanum demissum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT66771.1| Score 167 E Value 1e-40 Identity 21.30% Align. Length 389bp (98.48%) Frame 3
putative polyprotein [Solanum demissum]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0165E14
Clone
Clone name
hba-165e14
LE_HBa0165E14
P165E14
Clone type
BAC
Contamination
none
Estimated length
114,285
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found