Clone Read LE_HBa0171L13_SP6_263478

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0171L13_SP6_263478
Primer
SP6
ID from Seq. Facility
LE_HBa_171_L13-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
4 trimmed for vector and quality, 2785 raw
Sequence
>LE_HBa0171L13_SP6_263478 (raw untrimmed)
CGCATCTACACTCTGACTGTATAACCCTCACATCACGANCTGACATATACAATGCTTTCGATATANANCTTACTAGTACTATACATATATAAACAATNCT
AATNTACGATTNCTGACACANATACACTATACTTCACTACAATACTATTNCTGCTTATACATACCAATACTACNACCTTCACACCTATGATACCTTATAT
TACTCGACTATCACATTACTAACATTACCTTACACTANGACANCAATATAAAAAAGGTGACGACACCAGCTTCTCTCACTACACACTCACCTCTTCTCAC
TTGATACTATATACTATCATCTAGCTGGCTGATCTCAANCTCTGCCTATCTCTCTCCACAATATACATATCTACTATCCACTCTTAGANTCTCATTGTAT
ATACACTCATACTAAATGACACCACTACGTCTGCTCTGCCTATATTCTCAGACAGATAAGATAACACACACTCCTACTCTCACACACTCTATCACACNAT
AGACAACAATACTACATACTACAACTGTACTGCTCACTTATCAGCACACTTATACTCTACATCTCTTCTATATTGATACATATCGCTATCATCTATACAG
ATATTACACGTCCATANCACGATACTCAATCGTAGCTATCGATCTCACAACTCACACCACATCTAACTATATACATGAACATCCTGATGATCTACACTAA
CATGTACTCTATATGCAACACATATCNTCTCATTCTCACATATATTCACGCCTACCTANACACTACACTCNCACATATCCTTACATACGACTATCAGACT
GGCGCGTATATCTCTAATCCGTCACTTCTCTAACCTGACTATCAATNACGTGCACCACACTCAGCTCACGCACTCTCTGAGCCTCGACCCTATCTCTGAC
CCATAACTCCTGCATCACTACCATACACTCTGTCATGCAGCACACCATAGNTATCATCACAGTCTACTCTACCCCTACTCTCACATCACTCTATATCCAA
TCTTCACTGAAATATGATTACACTCGAGCAGCGTCTCACACTTCTACGATCTCTATGAAANCAACCTTTATATTAACATATACTTTGCTCGCTACAGACT
ATCCCACATTACCCTGACCTATATAAAGACACCCACTACACATACAGTACTACTATAATTACATATTGCATGCAACTATCAACATTCTCNCTACTGATTC
TCACGCAACTACATACATATGCTATCTCTCTATCTACACATTGAACTACACATTCACAACTCTCCTATCAGTTATATACACTATACCACTATCTTCTCTA
CACTTCTACACTACATACTCATNGTTCGCTACTTTGCATCACTATCACGCACACAGTCATCACNCTAACTATACCTAATATATCACAACTAATATTGACA
CATCTGATCTACTTCTGACCATACAACCANACAGCTCCATATGTGATCACATACACNANTAACGATANACACTATCGACTACTTNCTACATATATCACAC
ANATAGATACACCGATACACTACTACACCATATCNAGCGANCGTACATCACAACAGTACCACTTACTATTCTATATAGCTTACATAACACACCTACATAC
ATAGCTATTATACCTATCTGACCGCAACCAGCTANTACGAATGCTATATTCATACACATACACATANATTACAGTGATACTCTAACACCGTCTCTCTCAC
ATAATATGCTACTTACATCTATTTATGATCTCATTCACTCCTACNTACGAACTCAATTACATTTATACTAACATACTANTACACACCTACANCTCACTNA
NCATTGCGTCTACTCATTCTCTCAGTCTACCATGACTACGTCTTATACAATATATACTCCTCATTCTTATCNTGATTACTGCTCACACTNCTCATACTAT
TCATTCATACTCATCTCCACACTACATCGCCAATCTCCACTACATGCTGATATTCATCTGCATCACTAACACTCACTCACTATAATCATCTAATACATTG
TATTACACACCTACTCATTTACACGTCATCATANCTACATACATCTACCCTATTCTCACATCTACACATACTACTATCACCATGCTACAGACTACTTNAT
ATCGACTATACTTGATGTCTACATGAGCATTGTATCACAGCTCTCATTNCTATCNCGTATCCATCATATGCACATCTCTACACACNATCTCTNTCACTAT
CCACTCTCTACCACTACTTCCTGTCTCACTACTGCTCCTGCACTACACTGATNATACATCGACTCTTATCACCTATACTCTCTCCGACTCATCTCGTCCG
ATACACACATTATACATACNTCGTCGACTACCTATACATGCTTAATCTACTATACTATCTTGATAATCAGTAGTCTACATTCTACTATGCTGACTATATC
TACATATNTCATGTTATGCATCACTATNATCATAGATCATCTACTCTCTCCTCTGTACGCTCTACAATACCATCACATGCTAACGATATCTATATATACT
ACAACTCTCTCTTACGTGCAGCGACTATCATACTTACAGTCACACATCCACTNACATCATTATACTCTCAATCTCTCACCATCTCACACACACTACACTA
NATCTCACTGATATACCTACTCACTATCATNTACTATACACTCACACACTACTACTCGACTACACATCTTATCTACATCACTCACACGCTATATCATCAT
GCACTCTACTACATACTTCACTACAACNTCATACAACANCATAACGACTCTTCAATTCATGATCTATATACTNCNATCATCTATA
>LE_HBa0171L13_SP6_263478 (trimmed for quality and cloning vector)
CACT

This is probably not a useful sequence.

Problems:
  • Short cloning insert
  • Low complexity
 Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
1.77668
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0171L13
Clone
Clone name
hba-171l13
LE_HBa0171L13
C12HBa0171L13
P171L13
Clone type
BAC
Contamination
none
Estimated length
87,444
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found