Clone Read LE_HBa0177B24_SP6_263991

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0177B24_SP6_263991
Primer
SP6
ID from Seq. Facility
LE_HBa_177_B24-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
556 trimmed for vector and quality, 921 raw
Sequence
>LE_HBa0177B24_SP6_263991 (raw untrimmed)
GGCCGCTATTATAGATATTTAGAATTCTCTTGATAGAAACATCAGCTGCTTTAACTATGTCTCTGACAAGGAATACACGGACTCTTGAACCCTTGTCTGA
CAATATAAATTGGAAAAGGTCTTCTGTTGCAGAGACTACAGCCCGTATATCGAATGATCCCAATGGATCCGAGTAACTCTCCTGAGTTTCTCCTTCTGTT
TCAGAAGCCTGCTGAGATATTGCTGCAATCTGCAGGAAGATACACACTTAACAATTCACATACAGGAGTCCTAGACAACCCATCCCCAGCTTTATCAGTC
TCTGTGTCAACAGATGCTGAAGTATTTGAAAAGATCAAGCTTCAGGTAGTTTTTCTATTGTTTATCTTACCAAACAAAAAGAACAACAGAAAAGCTGACA
ACTTCCACCGAGTACTCATCACAACATACTATTAAATAAGATCATATTAAAAGGAAGACCTAGAAAATTCACACAAACTTTTCACATATAATAATTTTTG
AATCCAGCAGGAAAAGAGCTAAAACGGCCTTCTTTTCACAAATAGTCGAAGGTTCTTGTTCAGGAAAGAAATAAGCCTCACTTGTGCTACCTGCAAGAAA
CAAGTATAACAACACAGAGAAAGAATAATTGACTTACCGGTTCTCTCTTGAAGATTCCATCTAATAGAAACCATCTTTGCCGGATGAGAAGCTTCTCTCA
ATTATTCCCCTCCAATCAGGGAGTTGGGATTCTACCATAGATTCTTCTTTATTTACTAAAAGGAATATGCCTCTTTTTTAACAAACTTTTGGAAATTCTT
GGGGATTCCAATGCCTTTTTTTCAAGTTCTCTTTTAAAAAAGATTCCATAGTTCTTTTTTTATTTTCTTCAATATTTCTAATTTCTCGGCAAGGATACAA
ATAAAATTTTTTTATTCTTCG
>LE_HBa0177B24_SP6_263991 (trimmed for quality and cloning vector)
TCAGCTGCTTTAACTATGTCTCTGACAAGGAATACACGGACTCTTGAACCCTTGTCTGACAATATAAATTGGAAAAGGTCTTCTGTTGCAGAGACTACAG
CCCGTATATCGAATGATCCCAATGGATCCGAGTAACTCTCCTGAGTTTCTCCTTCTGTTTCAGAAGCCTGCTGAGATATTGCTGCAATCTGCAGGAAGAT
ACACACTTAACAATTCACATACAGGAGTCCTAGACAACCCATCCCCAGCTTTATCAGTCTCTGTGTCAACAGATGCTGAAGTATTTGAAAAGATCAAGCT
TCAGGTAGTTTTTCTATTGTTTATCTTACCAAACAAAAAGAACAACAGAAAAGCTGACAACTTCCACCGAGTACTCATCACAACATACTATTAAATAAGA
TCATATTAAAAGGAAGACCTAGAAAATTCACACAAACTTTTCACATATAATAATTTTTGAATCCAGCAGGAAAAGAGCTAAAACGGCCTTCTTTTCACAA
ATAGTCGAAGGTTCTTGTTCAGGAAAGAAATAAGCCTCACTTGTGCTACCTGCAAG

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.961701
Expected error %
0.243436
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At5g24970.1 Score 69 E Value 2e-12 Identity 20.60% Align. Length 179bp (32.19%) Frame 1
68418.m02957 ABC1 family protein contains Pfam domain, PF03109: ABC1 family
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAP40349.1| Score 69 E Value 7e-11 Identity 20.60% Align. Length 179bp (32.19%) Frame 1
unknown protein [Arabidopsis thaliana] gb|AAO42315.1| unknown protein [Arabidopsis thaliana] ref|NP_197879.2| ABC1 family protein [Arabidopsis thaliana]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0177B24
Clone
Clone name
hba-177b24
LE_HBa0177B24
C08HBa0177B24
P177B24
Clone type
BAC
Contamination
none
Estimated length
95,903
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found