Clone Read LE_HBa0092C16_SP6_26622

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0092C16_SP6_26622
Primer
SP6
ID from Seq. Facility
LE_HBa_092_C16-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
295 trimmed for vector and quality, 833 raw
Sequence
>LE_HBa0092C16_SP6_26622 (raw untrimmed)
AGGAGGATGCCTATGTGAGTGATGACACCTAATTACCTTATTTNCTAGCAGATACTACAACTGGAGTCACTTACACCTAAAGGGGCATGATCTTCCAACT
CACATAATAAATTCTGTCCAACGTTTAAGGTTTATTTATTGGGAGGCCAGATGTTCCAAAAGCCTCTCGAGAGATTGCTGCTGAAGTCGACTCAGAGCTT
GCAAGTTTACAGAATGATGAGGACTGGAATGCTGCTGTTCAGTTGTTGGTTAAAGCTGGTGATCCCGGTGCCCAGTCTTTACCGGCAAATGATTGGTATC
GCTTGCGTCGCAGGCTTGAAATTGTTAAGGTAAAATTGTGAAACTTTCATGTGTGATCGTCTGATTTTAACCCCATCTGTGTAAGCTTGATCACATGTTG
TATGAGTTATCTTGATCTTAGATGTTTCTGTGTTATTTTTTGTCACTTCTCGATGTGATTGAGGGATCCTGAGTTTCCTGACATCTCTTGACGTACATGA
ATAGAGTACTTGTATTGTTACATAGGAGCTCCTTGGGGTTTTGGAATAGTTGAGATTGGATTTATATGTGCCCATTGTTATTCCTGTTTGCTGTACCTGT
GCACTCAGCTTAAGATGATAAACTAGTAGTTTTGAATATGAAGTAAACTGGTCTGTCCGCTTTTCAGGTAGATATATAATATTGTCTGATATCACCACTA
CAGGTCTACACATAACCGTACTATGACTTCTGAGACACCATCCCTCTGATGTAACATCCTATATTGCTCCGTAGGACGTTACGAGCACGGCGATATTTTT
ATTTGCTGAATGCTGAGCAGGTGACGATATGAC
>LE_HBa0092C16_SP6_26622 (trimmed for quality and cloning vector)
TAAAGGGGCATGATCTTCCAACTCACATAATAAATTCTGTCCAACGTTTAAGGTTTATTTATTGGGAGGCCAGATGTTCCAAAAGCCTCTCGAGAGATTG
CTGCTGAAGTCGACTCAGAGCTTGCAAGTTTACAGAATGATGAGGACTGGAATGCTGCTGTTCAGTTGTTGGTTAAAGCTGGTGATCCCGGTGCCCAGTC
TTTACCGGCAAATGATTGGTATCGCTTGCGTCGCAGGCTTGAAATTGTTAAGGTAAAATTGTGAAACTTTCATGTGTGATCGTCTGATTTTAACC

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.97023
Expected error %
0.422199
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At5g20040.2 Score 82 E Value 4e-17 Identity 20.10% Align. Length 188bp (63.73%) Frame 2
68418.m02385 tRNA isopentenyltransferase 9 / IPP transferase 9 (IPT9) identical to tRNA isopentenyltransferase (IPT9) [Arabidopsis thaliana] GI:14279070
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At5g20040.1 Score 82 E Value 4e-17 Identity 20.10% Align. Length 188bp (63.73%) Frame 2
68418.m02384 tRNA isopentenyltransferase 9 / IPP transferase 9 (IPT9) identical to tRNA isopentenyltransferase (IPT9) [Arabidopsis thaliana] GI:14279070
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAK64114.1| Score 82 E Value 4e-15 Identity 20.10% Align. Length 188bp (63.73%) Frame 2
putative IPP transferase [Arabidopsis thaliana] gb|AAK25918.1| putative IPP transferase [Arabidopsis thaliana] ref|NP_851043.1| tRNA isopentenyltransferase 9 / IPP transferase 9 (IPT9) [Arabidopsis thaliana]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAM63091.1| Score 82 E Value 4e-15 Identity 20.10% Align. Length 188bp (63.73%) Frame 2
IPP transferase-like protein [Arabidopsis thaliana]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0092C16
Clone
Clone name
hba-92c16
LE_HBa0092C16
C12HBa0092C16
P092C16
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found