Notice: We have moved solgenomics to a new server and hosting system which caused some instability over the last few days. We apologize for any inconvenience.

Clone Read LE_HBa0006H15_SP6_2668

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0006H15_SP6_2668
Primer
SP6
ID from Seq. Facility
LE_HBa_006_H15-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
671 trimmed for vector and quality, 1007 raw
Genbank Accession
DU022861
Sequence
>LE_HBa0006H15_SP6_2668 (raw untrimmed)
AAAAATAAATGGTTCCTNNNGGCTATTGAGCAANNNNGNANGNNNANACNANNNNNNNAANGNNANNANCNNNNNGGGGNNNCCCTCTTTCGGANGAAAC
ACANCGAGNNCGTCNCCGTTTTTCTCCAACAATCCTGATGATCTGGGCGATGCAGCAACACGGGCTATCTTCCCCATTTTCAACCCGTCTCCGATAGTCT
CACCAACTTTGACTATCACGGCAAATTTTTCTCATATTAGCAACATGATTCGATCATAATACTCGGGTTCTTTCACCCGCACGAACACTTCTACAATTTC
CTTTTCAGACATGGGAGGTCTCACCCTCGCCGCTTCTTTTCTCCATCTATAGGCACAATCCCTATAGCTCTTGGATGATTTTTGCTTTATCTTTTCCAAA
GAGTATCGATCATGAACAATTTCTATGTTGTAAGAGAATCGATCGATAAAATCTTTGGCCAATGCATTCCAGCTGGGCCATTGCCTTGTTTCATGCGAGG
TGAACCATTCAAGATCTTGTCCACACATGTTTCGACTGAAGAGCCTCATCAATAGAGTTTCATCTCTACCAACTCCAACGAGCTGGTCGTAGTAGGCTCT
AAAATGAGACATGGGGTTCCCCACTCCTCCAAAAGTATCAAATTTCGAGATTTTGAACCCTTCCGGGAGGTCAAAATTTGGAGGAATACATAAGTCTTCA
TAACTAAGCTCGGCGATATCAGAGACATATTGGATCTCCTGCATGGCTTTCTTGATCTCTTCTTTTATGTCAACCTTTGCTTTTTCCTTTTCCCTCCGCT
CCCTTTCGTGTTCCTCATAATAGCCCAGCTCAAAACCGTACACATCGTGCTCGGCAGGGACGAGAATTGGAAAGTGGTCCTTTTGGGTAGGATGGACTAC
AAAGAAACCAAGCTTTTGAGCGGTTGATAATTTGGGGGAATTTTGCGAATGGTATTAATTAAAGTGGGCAGGGTTTTGGGATTAAAGATTTGGGTTGGTT
TGGTTTT
>LE_HBa0006H15_SP6_2668 (trimmed for quality and cloning vector)
TTTTCTCCAACAATCCTGATGATCTGGGCGATGCAGCAACACGGGCTATCTTCCCCATTTTCAACCCGTCTCCGATAGTCTCACCAACTTTGACTATCAC
GGCAAATTTTTCTCATATTAGCAACATGATTCGATCATAATACTCGGGTTCTTTCACCCGCACGAACACTTCTACAATTTCCTTTTCAGACATGGGAGGT
CTCACCCTCGCCGCTTCTTTTCTCCATCTATAGGCACAATCCCTATAGCTCTTGGATGATTTTTGCTTTATCTTTTCCAAAGAGTATCGATCATGAACAA
TTTCTATGTTGTAAGAGAATCGATCGATAAAATCTTTGGCCAATGCATTCCAGCTGGGCCATTGCCTTGTTTCATGCGAGGTGAACCATTCAAGATCTTG
TCCACACATGTTTCGACTGAAGAGCCTCATCAATAGAGTTTCATCTCTACCAACTCCAACGAGCTGGTCGTAGTAGGCTCTAAAATGAGACATGGGGTTC
CCCACTCCTCCAAAAGTATCAAATTTCGAGATTTTGAACCCTTCCGGGAGGTCAAAATTTGGAGGAATACATAAGTCTTCATAACTAAGCTCGGCGATAT
CAGAGACATATTGGATCTCCTGCATGGCTTTCTTGATCTCTTCTTTTATGTCAACCTTTGCTTTTTCCTTT

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.965374
Expected error %
0.0599136
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT39964.1| Score 174 E Value 2e-42 Identity 12.80% Align. Length 638bp (95.08%) Frame 3
putative gag polyprotein [Solanum demissum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAU90285.1| Score 129 E Value 9e-29 Identity 10.20% Align. Length 638bp (95.08%) Frame 3
putative gag/pol polyprotein, 3'-partial [Solanum demissum]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0006H15
Clone
Clone name
hba-6h15
LE_HBa0006H15
P006H15
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found