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Clone Read LE_HBa0006H20_SP6_2678

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0006H20_SP6_2678
Primer
SP6
ID from Seq. Facility
LE_HBa_006_H20-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
831 trimmed for vector and quality, 968 raw
Genbank Accession
DU022871
Sequence
>LE_HBa0006H20_SP6_2678 (raw untrimmed)
CAAAAAAACTGGTTTTCTTTTNTCTGTGTACACANTACTCTCAATGGTCATAGGAAACATCCTTTCCATACCAAGCACTATTTGGTACACCTTTTTGCAA
AGCAGCAACAAGAGATAGATTAATAACATGTACAACGGTCAATAAAGCCTCACCCCAAAATGAGTTTGGCAACTTTGCTTCAGAAAGCAAACATCTAACT
CTTTCCATCAAGGTCCTGTTCATCCTCTCAGCCAAACCATTAAGCTGAGGATTCTTGGAAGGAGTCTTCTGGTGTCTAATACCTTGATGCTTGCAGTATT
CGTCAAATGGTCCACAATATTCACCACCGTTATCAGTACGAAAACATTTCACTTTTTTCCAGTTTCTCTTTCAAGTGAAGCCTGAAACTGCTTAAAGACA
CCTAACACTTCGTCTTTAGTCTTCAAGACATAGACCCAAAGTTTTCTCGAGAAATCATTAATGAAAGTGACAAAGTAACGTGCACCACCCAATGTCTTTG
TCTTCCTTGGACCACATAAATCAGAGTGCACTAACTCAAGCAACTCTGTCTTTCTCGAAGGAGGGTAGGACTTAAAGGAAACTCTATTTTTTTTACCAGC
CAAGTAGTGCTCACATTTTTCTAATTTAGCACTTTGGAAATTTGATAATAATTTCTTCTTGGCTAGAACATTAAGTCATTTCTAGCTAATGTGGCTAAGC
CTCTTGTGCCATAATGTTGAAGAGCTATCGCTCTCAATCGCATTCACCATATCAACACTAGTAGATGTCGTAGTCCAGTATACCACGACATTTGTTACCA
CGAGCCACAACCAAGGAAACTCTAATGAGCTTCTATTTTCCATCACCATTGGTACTAACATATCCTTCATCATCTAAAACACCAACAGAAATTAGGTGCA
GACGAACATCAGGAGCATGTTTCAAATTGTCAAAACTAGTTTAGTTCTACACTAGTTTTCAAACAATT
>LE_HBa0006H20_SP6_2678 (trimmed for quality and cloning vector)
ATGGTCATAGGAAACATCCTTTCCATACCAAGCACTATTTGGTACACCTTTTTGCAAAGCAGCAACAAGAGATAGATTAATAACATGTACAACGGTCAAT
AAAGCCTCACCCCAAAATGAGTTTGGCAACTTTGCTTCAGAAAGCAAACATCTAACTCTTTCCATCAAGGTCCTGTTCATCCTCTCAGCCAAACCATTAA
GCTGAGGATTCTTGGAAGGAGTCTTCTGGTGTCTAATACCTTGATGCTTGCAGTATTCGTCAAATGGTCCACAATATTCACCACCGTTATCAGTACGAAA
ACATTTCACTTTTTTCCAGTTTCTCTTTCAAGTGAAGCCTGAAACTGCTTAAAGACACCTAACACTTCGTCTTTAGTCTTCAAGACATAGACCCAAAGTT
TTCTCGAGAAATCATTAATGAAAGTGACAAAGTAACGTGCACCACCCAATGTCTTTGTCTTCCTTGGACCACATAAATCAGAGTGCACTAACTCAAGCAA
CTCTGTCTTTCTCGAAGGAGGGTAGGACTTAAAGGAAACTCTATTTTTTTTACCAGCCAAGTAGTGCTCACATTTTTCTAATTTAGCACTTTGGAAATTT
GATAATAATTTCTTCTTGGCTAGAACATTAAGTCATTTCTAGCTAATGTGGCTAAGCCTCTTGTGCCATAATGTTGAAGAGCTATCGCTCTCAATCGCAT
TCACCATATCAACACTAGTAGATGTCGTAGTCCAGTATACCACGACATTTGTTACCACGAGCCACAACCAAGGAAACTCTAATGAGCTTCTATTTTCCAT
CACCATTGGTACTAACATATCCTTCATCATC

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.963761
Expected error %
0.215046
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAV88069.1| Score 176 E Value 1e-90 Identity 70.10% Align. Length 830bp (99.88%) Frame 2
hypothetical retrotransposon [Ipomoea batatas]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
pir||T02206 Score 154 E Value 7e-78 Identity 57.10% Align. Length 827bp (99.52%) Frame 2
hypothetical protein - common tobacco retrotransposon Tto1 dbj|BAA11674.1| ORF(AA 1-1338) [Nicotiana tabacum]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0006H20
Clone
Clone name
hba-6h20
LE_HBa0006H20
C08HBa0006H20
P006H20
Clone type
BAC
Contamination
none
Estimated length
103,355
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found