Clone Read LE_HBa0183G12_SP6_277562

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0183G12_SP6_277562
Primer
SP6
ID from Seq. Facility
LE_HBa_183_G12-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
611 trimmed for vector and quality, 997 raw
Sequence
>LE_HBa0183G12_SP6_277562 (raw untrimmed)
GGGGGGCGCTGCTCGAGAAGCACCCCAGAACTGTCTACAAGCACCAAATCCCCAACCATAAACTCTTGTTTTGCATTTTTCTGTTTAGTCTCCTTCTTCA
TCTTTTCCTTGTGGGATATGGCAGATACAAATTGGAGCTTCACTCTGCCTCATTGTCCTACAAATGTTGAAGGTCGCTTCTTCATTATTCAACTGAAATG
CCATCTGTCCCTTCTCCATATCAACTAATGCTCTACCTGTAGCAAGGAATGACCTCCCAAGAATAATAGGCACTTCAAAATCGACCTCGCAATCAAGAAT
AACAAAATCAGCCGGAAATATGAATGACTCCACTTTTACTAGCACATTCACTGTCCGATCAGCCATCAGTAGCCGCATCGCAGTGGGTTTTGGATCCCTC
AAACCCAATTTCTTCTAAATCGAGAGGGGCATGAGATTTATGTTTGCCCCCAGATCACATAATGCTTTCGCAAAATGTAATGACCCAACTGTACAAGGAA
TAGTGAACGCACCAGGATCTTCTTTCTTTTGTACGAGGGATCTTGTAGCAATAGCACTACAATGCTGCAGTTTATCATCATCCTTGAAAGTGACTGATCT
TTTCTTGGTGACCAGATCTTTAATAAATTTGGCATAACCGGGCATTTGTTCTAGAGCTTCTACCAAAGGGACATTGATAGAAAGTTGCTTCAACATTGTT
ATGAAACGCCGGGATTTACCATCCTCGGTCTTTTTCACGAATTCCTAAGGGAAAGGTGGTTGGTGCCCTAAGAATAAGAATTACCTTTAAAAGGTACTTC
ATGCATCTTTTCCATTCCTTTTCTCGGCCTCAACAACTACCTTTTATCAAATTTAATATTATACCTTTCACACTTTATTCTTTTCTAAATTGTTCTCCCT
AAGAATGGACTATGTAGGTTCCATCGTTTTTCCTCATAACCCCCACATGAGATTTTCCATACCCAGGAGCTTAAGTCTTGGGGATTTTAGAAAATGG
>LE_HBa0183G12_SP6_277562 (trimmed for quality and cloning vector)
AGCACCAAATCCCCAACCATAAACTCTTGTTTTGCATTTTTCTGTTTAGTCTCCTTCTTCATCTTTTCCTTGTGGGATATGGCAGATACAAATTGGAGCT
TCACTCTGCCTCATTGTCCTACAAATGTTGAAGGTCGCTTCTTCATTATTCAACTGAAATGCCATCTGTCCCTTCTCCATATCAACTAATGCTCTACCTG
TAGCAAGGAATGACCTCCCAAGAATAATAGGCACTTCAAAATCGACCTCGCAATCAAGAATAACAAAATCAGCCGGAAATATGAATGACTCCACTTTTAC
TAGCACATTCACTGTCCGATCAGCCATCAGTAGCCGCATCGCAGTGGGTTTTGGATCCCTCAAACCCAATTTCTTCTAAATCGAGAGGGGCATGAGATTT
ATGTTTGCCCCCAGATCACATAATGCTTTCGCAAAATGTAATGACCCAACTGTACAAGGAATAGTGAACGCACCAGGATCTTCTTTCTTTTGTACGAGGG
ATCTTGTAGCAATAGCACTACAATGCTGCAGTTTATCATCATCCTTGAAAGTGACTGATCTTTTCTTGGTGACCAGATCTTTAATAAATTTGGCATAACC
GGGCATTTGTT

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.970565
Expected error %
0.0557945
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
pir||T12086 Score 133 E Value 4e-30 Identity 14.30% Align. Length 509bp (83.31%) Frame 2
hypothetical protein - fava bean (fragment) dbj|BAA22788.1| retrotransposon-like gene~the first amino acid was determined to be leucine [Vicia faba]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
ref|XP_475041.1| Score 131 E Value 1e-29 Identity 13.90% Align. Length 503bp (82.32%) Frame 2
OSJNBa0042F21.11 [Oryza sativa (japonica cultivar-group)] emb|CAE02304.2| OSJNBa0042F21.11 [Oryza sativa (japonica cultivar-group)]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0183G12
Clone
Clone name
hba-183g12
LE_HBa0183G12
P183G12
Clone type
BAC
Contamination
none
Estimated length
102,810
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found