Clone Read LE_HBa0095C09_SP6_28144

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0095C09_SP6_28144
Primer
SP6
ID from Seq. Facility
LE_HBa_095_C09-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
283 trimmed for vector and quality, 830 raw
Sequence
>LE_HBa0095C09_SP6_28144 (raw untrimmed)
ATCTTAGATGCGCGGCGACCCGAATGAGACGAAGGAATACTTTGCAGGAAATTCATGACCTTGGTAGACTACTCGCACCAATTTCTCACCTTTCCAATGG
GAAGGTAAGAACTTCATTGTTTATTAGTGATTGCCTCCTATTCGTGGTTTGGGTGCAGTACTAATGCAAGAGAAGAATGTAATTGCTTATGCTTCGAGGC
AATTAAAGGTGCATGAACGTAACTATCCGATCCATGATTTGGAGTTGGCTGCAGTCGTGTTTGCATTAAAGCAATGGAGACATTATCTATATGGGGTTAA
GTGTGAAGTCTATACAGATCATCGCAGTTTACAGTATGTATTTACTCTGAAAGATTTGAATTTAAGACACAGGAGGTGGATGGAACTACTGAAGGACTAT
GATATTACTATCTTATACCACCCAGGAAAAGCTAATGTTGTGGCAGATGCTTTAAGTAGAAGAGCAGGAAGCATGGGAAGTCTTGCTCATTTGCAGGTTT
CTAGACTCTCATTGGCTAGAGATGTTCCGACCCTGGCTTATTGACTCTACGACGTCGGAAGTGCTGGACAGAGAAAGATTCTCGCTCTTTGCGGCTCAAT
TTCTTCTCTTCTTGTCTTTCTTAGGAATATCTCCTCTTTCTTCTGCCCATGTTCTTGATTTTCGCAGGTCCCTCTACGGTAGACAAATGACTAACATTTA
CGACGCTCGATCTCGTTAGTCGTGCATCGCCGTTGCCCACCGCGCACATAAGGTCGCCCGCTCATTGACCTACAAACACGATACACACATCTTAGTTGAC
TTGACTATCGCCTCATTCTGCGCGGCGTGC
>LE_HBa0095C09_SP6_28144 (trimmed for quality and cloning vector)
CTCCTATTCGTGGTTTGGGTGCAGTACTAATGCAAGAGAAGAATGTAATTGCTTATGCTTCGAGGCAATTAAAGGTGCATGAACGTAACTATCCGATCCA
TGATTTGGAGTTGGCTGCAGTCGTGTTTGCATTAAAGCAATGGAGACATTATCTATATGGGGTTAAGTGTGAAGTCTATACAGATCATCGCAGTTTACAG
TATGTATTTACTCTGAAAGATTTGAATTTAAGACACAGGAGGTGGATGGAACTACTGAAGGACTATGATATTACTATCTTATA

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.958744
Expected error %
1.18837
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT38745.1| Score 156 E Value 1e-37 Identity 26.30% Align. Length 269bp (95.05%) Frame 1
putative polyprotein, 3'-partial [Solanum demissum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
emb|CAA73042.1| Score 154 E Value 6e-37 Identity 25.70% Align. Length 275bp (97.17%) Frame 1
polyprotein [Ananas comosus] pir||T07863 probable polyprotein - pineapple retrotransposon dea1 (fragment)
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0095C09
Clone
Clone name
hba-95c9
LE_HBa0095C09
P095C09
Clone type
BAC
Contamination
none
Estimated length
138,784
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found