Clone Read LE_HBa0006N20_SP6_2966

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0006N20_SP6_2966
Primer
SP6
ID from Seq. Facility
LE_HBa_006_N20-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
759 trimmed for vector and quality, 946 raw
Genbank Accession
DU023127
Sequence
>LE_HBa0006N20_SP6_2966 (raw untrimmed)
AAAAAAAATGGGTTCTCTTCCTCCATTGATCNGATNNGAAGTAACTANGGAAAAACAGTTTATATCCTATTAAGGATGAGACAAACATCCCTTTTCGAGC
TGACATTTTGGGTTGCGGAGTGGGAAATTGCCTTCAACTTATTTGGGTATTATGAAATACATACAAAGATTTGAAGATATGGGACAACATATTTGAGAAG
TTTGAAAAGAGACTAGCTAGATGGAAGGCTCAATACATTTCTTTTGGTGGCAGACACATTCGTATCAACTCCGTTTTAGACTCTCTCCCAACATATGGTA
GGTCTCTTTACACTATACCGGCAGAAGTGGTTAAGAAATTGGACAAACTAGGAGGGATTTCCTTTGGCATGGTTGCAAAGAGTACAAAGGATACATGGTC
CAGTGGGCGACAGTTTTGCATAGAAAAGATAAAGGTACATGGTCAAGTGGGCGACAGTTTTGCATAGAAAAGATAAAGGTATCTTAAGCATAAGAGCAAT
TTTTTATCAAACGATTGAGGAGATATACTAAGAAGAGGCAAGCTTTGTGGAAAGATTTGGTTAAATGTAAATATGGGGAGGATGGATTCTGGTGTAGTGA
CATAAGCACGGATGCTTATGGAGCGGGGTTTAAAGAGCTATTAGGAACTTATGGCCCAAGTTAGAAGCAAATTTACATATCAAGGTGGGGATGGCAGGAC
AACTAGATTCTGGAGGGATGTATGGATCAAACAAACCCCCCCCCTGAAACACATGTTTCCTTGTCTATTTTGTGCACTGATTGCCGGACAGTACAAGGTT
GAAATATCTATTTCAGAAGAAACTAAATGATTGGGAAGTTGAGAGAGTATGCCCAATTGTTGGAGGAAGTGGGTGATTTTGCAGGCACTTATACTGACAA
TGATGTTGTTAGATGGTCCACAGTAAGGATGGGATCTTCATTGTTG
>LE_HBa0006N20_SP6_2966 (trimmed for quality and cloning vector)
AACAGTTTATATCCTATTAAGGATGAGACAAACATCCCTTTTCGAGCTGACATTTTGGGTTGCGGAGTGGGAAATTGCCTTCAACTTATTTGGGTATTAT
GAAATACATACAAAGATTTGAAGATATGGGACAACATATTTGAGAAGTTTGAAAAGAGACTAGCTAGATGGAAGGCTCAATACATTTCTTTTGGTGGCAG
ACACATTCGTATCAACTCCGTTTTAGACTCTCTCCCAACATATGGTAGGTCTCTTTACACTATACCGGCAGAAGTGGTTAAGAAATTGGACAAACTAGGA
GGGATTTCCTTTGGCATGGTTGCAAAGAGTACAAAGGATACATGGTCCAGTGGGCGACAGTTTTGCATAGAAAAGATAAAGGTACATGGTCAAGTGGGCG
ACAGTTTTGCATAGAAAAGATAAAGGTATCTTAAGCATAAGAGCAATTTTTTATCAAACGATTGAGGAGATATACTAAGAAGAGGCAAGCTTTGTGGAAA
GATTTGGTTAAATGTAAATATGGGGAGGATGGATTCTGGTGTAGTGACATAAGCACGGATGCTTATGGAGCGGGGTTTAAAGAGCTATTAGGAACTTATG
GCCCAAGTTAGAAGCAAATTTACATATCAAGGTGGGGATGGCAGGACAACTAGATTCTGGAGGGATGTATGGATCAAACAAACCCCCCCCCTGAAACACA
TGTTTCCTTGTCTATTTTGTGCACTGATTGCCGGACAGTACAAGGTTGAAATATCTATT

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.967908
Expected error %
0.253668
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT40556.1| Score 71 E Value 5e-13 Identity 44.40% Align. Length 352bp (46.38%) Frame 2
hypothetical protein PGEC542.21 [Solanum demissum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAU89733.1| Score 57 E Value 5e-18 Identity 33.00% Align. Length 524bp (69.04%) Frame 2
hypothetical protein [Solanum tuberosum]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0006N20
Clone
Clone name
hba-6n20
LE_HBa0006N20
P006N20
Clone type
BAC
Contamination
none
Estimated length
108,868
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found