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Clone Read LE_HBa0175H12_SP6_302280

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0175H12_SP6_302280
Primer
SP6
ID from Seq. Facility
LE_HBa_175_H12-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
1 trimmed for vector and quality, 1400 raw
Sequence
>LE_HBa0175H12_SP6_302280 (raw untrimmed)
ACCCTCGCTGCAGTTCTCTCAATAGAATTGCTTGTCAGTAGACACTCATAATTTTCCTTCAACAACACTATAAGCACCCGATGCGTGTTTAAGTAAACAT
CATCGTTCAAAACAATTAGTGTTATAAAATTCTTCTGTCACACGAGCAACTTCTCTATTGTTAACACTCACGCTTTTCGCACCGCGGNGTAAATCTAATA
TGCCACTCTTCTCCTCCTATATATACAACTTATAGGTAGACCTCTTACCATTCTGAACCTCTACTATAATCCATTGTAATATACTCTCTTTTCCACAGTC
CTACATCACCATCCACTTTTTCATCACCTGCAANCTTTTACCGTGAAGTCAAGTTAATTGATAACTATACGAATCATATCCTTATCTCCTCCTACTTCAC
TATCACTTCTTAAACTCTGACTATCTAATCCATTTAATAATAGCTCTCTCTTTCCACGTAGTTACTACATTCATATTGCACTCATATTATGAGTAGGCAA
TATTTTACTTTCATATATCTCTCATTATACTCTAGAGAACTGTAGTTTCTATACTTTAATCTTTCGTGACTCTATATACTCAATAATCACGGCACGCCAC
TAACTTATTTGTTCCTCTCACTACACTTCCTTCTTCTCTCACGTCGCTCCCATCCTATTCCTCTCCTCGTATTCACAATGTCCCTCGTAATTCCTCAAAA
TTCCCCCCTTTCTTAATGCTTACTTCTCTCAATCCCTTCACTCTCCTACTCTCTTCTTATCATACCACTACTCTACTACTCTCCATAAACATCTTTCTCC
CTCCTAATTATCTCTACTATACACATCTCATAGCAACCATACCTCAATAATACTTCAACTACAAATTGCCAACATTTTACCATCTATAACATATACACTC
TCCTCTACTTCCTCTTTACCTTATCATACTTTATATCTCCACTCCACTACTTTTTCCCTCCTTAATTCCCCACACGCTTCCCTTCCTCTCATAATACTTC
TCCGATCTACCTATCCTACTTCTTATCTCTCGCAACTCTCACCATCCATTCACTCATCTTCTCTTGTCATATCTTTACCCTACTATCTGTATTTTTTCAT
TCCACTTCTACACAACATAATCAACTCACCTTCTCCCTCTCTCCGCAATCATCCTAAACTCTATCTCTCTATTACATCTCTCATCCATATACCATTTACT
ATTCCTTTATCTCTTCTCACATCTGTCATTACATGCACCAAACTAGTCCTGTCATAATTCTCTCTTATACTCTTATATCAACTAGATTCCCACATATCTC
TCATCTCCTGATCCACTTCATCTTCATTCATTCCTCATCATCTTATTTCCACAACTATCTTCTCCACATCCAATCTATCATCATCATAACCTCTCTTTTA
>LE_HBa0175H12_SP6_302280 (trimmed for quality and cloning vector)
A

This is probably not a useful sequence.

Problems:
  • Short cloning insert
  • High predicted error rate
  • Low complexity
 Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
100
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0175H12
Clone
Clone name
hba-175h12
LE_HBa0175H12
C08HBa0175H12
P175H12
Clone type
BAC
Contamination
none
Estimated length
81,296
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found