Clone Read LE_HBa0098B16_SP6_30414

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0098B16_SP6_30414
Primer
SP6
ID from Seq. Facility
LE_HBa_098_B16-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
414 trimmed for vector and quality, 751 raw
Genbank Accession
DU089441
Sequence
>LE_HBa0098B16_SP6_30414 (raw untrimmed)
TTATGGGAATGATTAGCAGGGTTCACAAACATTCAGATGCCAAATGTAGAACCCTTACTTTGCTGCTCTGAGTTTTACTTTTAGAAAGTGAGGGTCGAAG
GCAGCTGCAGATGCACAATCACTGATTGCTTCCCTCATCCTTCTAAGTGACATTCGAGTGGCAGCTCGGTTGCTGTAGCATAACAAAAGAGGATCCAGGC
AAGAGCCTGAAATTTCTGTAGCAGAGACTGATTTGATACCCTTAGTGTATAAATCCTCAGCTTGCAAAAGATTTCCAGCCTTATAGGCTTGATTTCCCCT
GATACAGACAAAATCATTGTAAATATGAAGGACAAGTATATAATGCTTAATATCAGAATGTGATAGTTCCAGAAAAAGCCAGAACACAACCATAATGATG
AAATTCATTCGCAGCAAAAGTGAAATCCTAAAGCTCAAATGAAATCTTGACAATCATAGCATTTCACCAAAGAGTAGCTAATAGATATTAGCACCTTGAT
CCGTCCTCTTTTTCTAAGACTTCACGGTCAGTGAGTTCCAGCATCCCATGGTCTTCGTCTATTTAAAACACATGTATAATTTTTTTATGTTTATGGAATT
ATTACTCTCCTTGGGATGGTCTCTTGTAATTTTTGCAGCTAATTGTATAAATTTTGAATGTTTTTCCACGGGGAAACCTCAAATTTTATCTGTACATTAA
AGTACGATATAAACATCTTTTCCCATTTTTTATTTATGTTTTTTTTTTTAC
>LE_HBa0098B16_SP6_30414 (trimmed for quality and cloning vector)
GCCAAATGTAGAACCCTTACTTTGCTGCTCTGAGTTTTACTTTTAGAAAGTGAGGGTCGAAGGCAGCTGCAGATGCACAATCACTGATTGCTTCCCTCAT
CCTTCTAAGTGACATTCGAGTGGCAGCTCGGTTGCTGTAGCATAACAAAAGAGGATCCAGGCAAGAGCCTGAAATTTCTGTAGCAGAGACTGATTTGATA
CCCTTAGTGTATAAATCCTCAGCTTGCAAAAGATTTCCAGCCTTATAGGCTTGATTTCCCCTGATACAGACAAAATCATTGTAAATATGAAGGACAAGTA
TATAATGCTTAATATCAGAATGTGATAGTTCCAGAAAAAGCCAGAACACAACCATAATGATGAAATTCATTCGCAGCAAAAGTGAAATCCTAAAGCTCAA
ATGAAATCTTGACA

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.949562
Expected error %
0.913577
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At5g12430.1 Score 102 E Value 1e-22 Identity 20.60% Align. Length 242bp (58.45%) Frame 3
68418.m01461 DNAJ heat shock N-terminal domain-containing protein similarity to TETRATRICOPEPTIDE REPEAT PROTEIN 2 , human, SWISSPROT:TTC2_HUMAN; contains Pfam profiles PF00226: DnaJ domain, PF00515: TPR Domain
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At2g41520.1 Score 89 E Value 6e-19 Identity 18.10% Align. Length 242bp (58.45%) Frame 3
68415.m05130 DNAJ heat shock N-terminal domain-containing protein contains Pfam profiles PF00226: DnaJ domain, PF00515: TPR Domain
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
ref|NP_568276.2| Score 102 E Value 4e-21 Identity 20.60% Align. Length 242bp (58.45%) Frame 3
DNAJ heat shock N-terminal domain-containing protein [Arabidopsis thaliana]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
emb|CAC42904.1| Score 102 E Value 4e-21 Identity 20.60% Align. Length 242bp (58.45%) Frame 3
putative protein [Arabidopsis thaliana]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0098B16
Clone
Clone name
hba-98b16
LE_HBa0098B16
P098B16
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found