Clone Read LE_HBa0099A10_T7_31123

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0099A10_T7_31123
Primer
T7
ID from Seq. Facility
LE_HBa_099_A10-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
589 trimmed for vector and quality, 888 raw
Sequence
>LE_HBa0099A10_T7_31123 (raw untrimmed)
TTTTAACTTGGTCCCGGGGGATCCTTCTAGAGTCGACCTGCAGGCATGCAAGCTTCGCCTAGTGGTTGGGATTCAACTGTTCCAAAAGAATTCCAGTTTT
ATGCACTCTAAACTCATCACGATAAAGAGGGTTCTCCCGATATGGTTATCTATATGTTCAAAGTCTTTCTTCTTGATGTTTATTCTTTACTTAATCCCCA
TGATACCTTGCCTTTTGTGATTCTATATGTGGCTATAAGGTTTTATGTTTTTTGGATGTATTGATAGATCATTTTCATGTCTCTACTCCCATTGATGAAT
TTATTATTTAAGAGAGTCTACAAAAGTGGTTTGGTCTCTTCATCACATAGAGACACTCATGTTGATTTTGTAGAACTTGATATGTTAGATTTAGATGTTA
ATACTTGTATAGATTAACTCCATTCTTTTTATGTTTCTATTAATTGTAGAACTCGAGTTGTCAAGCTTCAATTTCTAATGAGCCCATCTTAGATCAGAAA
AGCGAAAATTATATGCTTAAGGGTTAGTTTATTTCTTGTCTTAAAGCTATAAAGATGATTTCTAAGGGATGCGTATGCCATCTTGTTCGGGTTGAGGATA
TGAATTTTGGAACCCCTATATTTCATTCAGTGTCCATTGTAATCCAGCTTTTGGAAGTATTATCCCAATTTATTTGGTGTTCCTCCCTAAAAAGAAATAA
CTCTCACAGCTGTCATTCTCTTTCATATGCCTCTCTTCACTATGTCTTCCTTATCTTGGGGGTCCTCCCAACACACTGGCATTTAACACTTTCTATAGAT
TTTATGCAACGCTTTTATTTTCCATTATATTTTTCTTTATTATAGTCTCTATATATAGATCATACTTAATTTCTCCTCACTTTTCATC
>LE_HBa0099A10_T7_31123 (trimmed for quality and cloning vector)
AGCTTCGCCTAGTGGTTGGGATTCAACTGTTCCAAAAGAATTCCAGTTTTATGCACTCTAAACTCATCACGATAAAGAGGGTTCTCCCGATATGGTTATC
TATATGTTCAAAGTCTTTCTTCTTGATGTTTATTCTTTACTTAATCCCCATGATACCTTGCCTTTTGTGATTCTATATGTGGCTATAAGGTTTTATGTTT
TTTGGATGTATTGATAGATCATTTTCATGTCTCTACTCCCATTGATGAATTTATTATTTAAGAGAGTCTACAAAAGTGGTTTGGTCTCTTCATCACATAG
AGACACTCATGTTGATTTTGTAGAACTTGATATGTTAGATTTAGATGTTAATACTTGTATAGATTAACTCCATTCTTTTTATGTTTCTATTAATTGTAGA
ACTCGAGTTGTCAAGCTTCAATTTCTAATGAGCCCATCTTAGATCAGAAAAGCGAAAATTATATGCTTAAGGGTTAGTTTATTTCTTGTCTTAAAGCTAT
AAAGATGATTTCTAAGGGATGCGTATGCCATCTTGTTCGGGTTGAGGATATGAATTTTGGAACCCCTATATTTCATTCAGTGTCCATTG

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
0.934975
Expected error %
0.713073
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT38790.1| Score 100 E Value 2e-20 Identity 14.30% Align. Length 434bp (73.68%) Frame 3
putative gag-pol polyprotein [Solanum demissum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT38792.1| Score 100 E Value 2e-20 Identity 14.30% Align. Length 434bp (73.68%) Frame 3
putative gag-pol polyprotein [Solanum demissum] gb|AAT38791.1| putative gag-pol polyprotein [Solanum demissum]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0099A10
Clone
Clone name
hba-99a10
LE_HBa0099A10
P099A10
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found