Clone Read LE_HBa0099J04_SP6_31542

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0099J04_SP6_31542
Primer
SP6
ID from Seq. Facility
LE_HBa_099_J04-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
675 trimmed for vector and quality, 918 raw
Sequence
>LE_HBa0099J04_SP6_31542 (raw untrimmed)
CCAACCTTAATATTTTGACAATTTTAGCTCAGTTGCTTTTTAAACTAGTTTGTCTTTTTTATTTTAATTTGCAGAACAGAAGAAACAGAAACTGTCTGAA
ATAAAAGCTGGCCTAGATGATGCTCAAGCATTGGTAATTTGTAAGCTTTGGCTGCAACCTGTTTTTGCTTGTTTCTGAAATATTTTTGTTTATAATGCTC
TTTTGTCCTTATTCCACATTCGCAAAATGGACCTCCCAGCTCGGAGTTTACCTCCAAATGTTAAAGCCACACTTCTTGCCAACGTTGAGAGAATATAAGA
GTGATCTGAACAACTTAAAAACTGAAGTGAAAAGAATCACATCAGGAAATGCAAACCAAGCTGCAAGGGATGCATTGTTGGAATCGGGACTGGCAGATGC
TAACATGGTAATCCCCTTTCCCTATCGTGTTTTCAAGAGTCAAGCTCGTCCGTTAACGAAAGAACTATAAGCTAATCTTTATCCTTTATAGCTTACATAA
GTAGATTCACATTCCCTTCCTGTTGAGTGTAGGCTGCTAGTTTTCAATTGCTACTTCAATCGTAATGGCATGCATATAATTGTACTCGTGCAGACTGACT
ATCATAGTTTTCCAGACATCTGAACCAATAGTGCTTCTCTCACATTGTATTACTTTATGNNNNNNCATTTCCAACTTTATCTTTGTGGTCTATCAACTTT
AGGTTCTATTTTGCCCCCTCTTTTGTGTTGTTTGAATGATTTTTCTTTACAAGGGAAGTTTATCCAGTGTGGTGTCGTTTAAGTCAAAAGCGAGAATATT
CAAGTTATGTAAGCTCCAAAGTTTTACTCGTTCCATTCTCTTTATTGAATAGGTAATCCTGTTGGACATAGGTAAAAATGTTAATTTATTTTTTCTTTTG
TTTGCATCTTCGCAATCC
>LE_HBa0099J04_SP6_31542 (trimmed for quality and cloning vector)
AGCTCAGTTGCTTTTTAAACTAGTTTGTCTTTTTTATTTTAATTTGCAGAACAGAAGAAACAGAAACTGTCTGAAATAAAAGCTGGCCTAGATGATGCTC
AAGCATTGGTAATTTGTAAGCTTTGGCTGCAACCTGTTTTTGCTTGTTTCTGAAATATTTTTGTTTATAATGCTCTTTTGTCCTTATTCCACATTCGCAA
AATGGACCTCCCAGCTCGGAGTTTACCTCCAAATGTTAAAGCCACACTTCTTGCCAACGTTGAGAGAATATAAGAGTGATCTGAACAACTTAAAAACTGA
AGTGAAAAGAATCACATCAGGAAATGCAAACCAAGCTGCAAGGGATGCATTGTTGGAATCGGGACTGGCAGATGCTAACATGGTAATCCCCTTTCCCTAT
CGTGTTTTCAAGAGTCAAGCTCGTCCGTTAACGAAAGAACTATAAGCTAATCTTTATCCTTTATAGCTTACATAAGTAGATTCACATTCCCTTCCTGTTG
AGTGTAGGCTGCTAGTTTTCAATTGCTACTTCAATCGTAATGGCATGCATATAATTGTACTCGTGCAGACTGACTATCATAGTTTTCCAGACATCTGAAC
CAATAGTGCTTCTCTCACATTGTATTACTTTATGNNNNNNCATTTCCAACTTTATCTTTGTGGTCTATCAACTTT

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.966743
Expected error %
2.16265
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At3g29100.1 Score 67 E Value 1e-16 Identity 71.70% Align. Length 186bp (27.56%) Frame 2
68416.m03643 vesicle transport v-SNARE 13 (VTI13) / vesicle soluble NSF attachment protein receptor 13 identical to identical to Vesicle transport v-SNARE 13 (SP:Q9LVP9) {Arabidopsis thaliana}; similar to v-snare AtVTI1a (GI:6690274) (GB:AAF24061) [Arabidopsis thaliana]
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At5g39510.1 Score 65 E Value 6e-20 Identity 42.30% Align. Length 324bp (48.00%) Frame 2
68418.m04784 vesicle transport v-SNARE 11 (VTI11) / vesicle soluble NSF attachment protein receptor VTI1a (VTI1A) identical to SP|Q9SEL6 Vesicle transport v-SNARE 11 (AtVTI11) (Vesicle transport v-SNARE protein VTI1a) (Vesicle soluble NSF attachment protein receptor VTI1a) (AtVTI1a) {Arabidopsis thaliana}
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
dbj|BAC42873.1| Score 67 E Value 4e-13 Identity 71.70% Align. Length 171bp (25.33%) Frame 2
putative vesicle transport protein [Arabidopsis thaliana]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
dbj|BAB01986.1| Score 67 E Value 3e-18 Identity 40.80% Align. Length 324bp (48.00%) Frame 2
vesicle transport v-SNARE (vesicle soluble NSF attachment protein receptor) protein [Arabidopsis thaliana] sp|Q9LVP9|VT13_ARATH Vesicle transport v-SNARE 13 (AtVTI13) (Vesicle transport v-SNARE protein VTI13) (Vesicle soluble NSF attachment protein receptor 13)
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0099J04
Clone
Clone name
hba-99j4
LE_HBa0099J04
C03HBa0099J04
P099J04
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found