Clone Read LE_HBa0099L23_SP6_31676

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0099L23_SP6_31676
Primer
SP6
ID from Seq. Facility
LE_HBa_099_L23-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
10 trimmed for vector and quality, 698 raw
Sequence
>LE_HBa0099L23_SP6_31676 (raw untrimmed)
TTTTTTACAAAAGCGCCCCTTTTATAAAGGAATGTAAAAAGAAAATTTTTAGTGAAAAAATAAATCCCTTTAAAAAGGGTTTTTTTTAAAAATTAAATAA
TTATTGATTGTGGAGTGTGGTAATTAAAGTGGTAATTGATTTGATTTGAATTTAATTTTTATATTTTTTTGTGTTTTGTATTTTTTAAAAGAATGGTATT
TGAGAGAGTAAGGGTTTTTTATTAATAATTATAAATTGAATAAAATATANNNANGGGGGGGGGTTGTTTTTGTGTTTGGGTTGTTTCTGGCAGTAGATTA
ATTGTATAACCGCTCACTCTAGAGAGATAATTTCAGAAATAACACACATAATACATATCAAAAGACTTTTTATTTATAATTCCCCACACTTGCGCTCATA
CGTGGGCTCTGCTTGCTATGGAGGCTGCATTTTGTATAATTCTGTCGGATTGCATACCTCACGTGGTAATAAAGTAATATACCTATAGGGGAAATGTATA
CAACTTCTATATCAGAATTTTTCATAACTCTGTTATCTATTTCGCTTGCCAAAAATAAAGAACGTAATTTAGTGAGAATGTTTCTAAACCCTACACTATT
ACTATATAGCATATACAAAACTCCGAATTATACATCAGGATCCAAATATAAATTTGATTTCAAACAACTCATGAATACAAAAATCGCAAAACCTATCG
>LE_HBa0099L23_SP6_31676 (trimmed for quality and cloning vector)
ATTATAAATT

This is probably not a useful sequence.

Problems:
  • Low complexity
  • Short cloning insert
 Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
0.388496
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0099L23
Clone
Clone name
hba-99l23
LE_HBa0099L23
P099L23
Clone type
BAC
Contamination
none
Estimated length
139,814
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found