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Clone Read LE_HBa0103A09_SP6_32656

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0103A09_SP6_32656
Primer
SP6
ID from Seq. Facility
LE_HBa_103_A09-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
1 trimmed for vector and quality, 1945 raw
Sequence
>LE_HBa0103A09_SP6_32656 (raw untrimmed)
CTGACCCTTGACATCCGTACTGATTTCTGTNCACGNAGCNCGCGCAGNTCCNTANCTACAGACGCGNACTGTCGATGGTCGAGTGAGCGGTGCGATATGC
GTGCACGANGACAGTAGTCNGTCTACAGGTGATGGACTANNATCTGTCNTCATTATATAATCTNGCATAGATCTCTCTGANGTNTCACATCACTGACATC
GACACTCACAGTATGTGTGGAGGTGAGCGTACTACTGAGACANTGTTAAGATGTGCAGACTCTCCATCATGCACATTTGAGACANTGTCACGATGTATNA
GCGACATGTCTCTCCCTATAACAAGCAGAATANGNACTAAGNANTNCTGTATATCGCGCTAAGTGAGATGAGAGACGTGATAAGTATATNATTNATACAN
ANCTATATACTGCANTGCGCTACGCGACANTACGTACCNTACACAACTACTGAATACACCTATCACTGTGACTGNTACGATACTACATAGATACGACCGC
GTGTATGTGCTCCTCCACTCGTGCGCGACACTCCACTCCTCGCTNCTCTGACGCTCTTCCTACATCACTAGACGAAGATACAGACATAGTACAGAACATT
GTNGCTAACGNTAGATCTTTGATTATTGGTAGTTTGTATTAACGACTTTACAATGCATATTCGCTGAGCGTGCTTAGCTCGGTACAACGAGACATACAGT
ACTCTCNTCTCTTGCTCTTATATNANGTCTCGTCTCTGCCTGCAACTACTAGTATTGCCTGCTCTGCACGATGCGCACTGCCTGAACAGAGCGATACTGT
GACTANCATGATGCGTATGATACAACTCACTATTGCAANTGCGCTACAATANTATNGCGACAATGCTCACCACGAACTATAAGAACAGAAGCTCGAGAAG
TAACAATCTACTNCACTTCACTACTACTAGNCTACTAATATAGATTGACTACCGCTGTGCTTGTCTTTATACATTCTGCTGACTGCTATATCTGATCGCT
TTATCGACTGACCGCGTCACTGCCTCTCTATACNTCTACTACATCATATATCGATGATACTACATGTTACTAATCTTGTACTATNTACTCGCATCTGACT
CTCATACACGTCNACGTCTCACGTGTATCTGTCGTCGATGNATCGCTCCATATATCCCTCGATTGATAGATCGCTGATCGACGAGCTNCGACTCTCGTAT
CTCTCATTCACCTCTACATGTAGCTCAATAGCTCANCTTCTCGAGACTTCCACACGTTCTATTTGCGCTCTATGCTACGCNACACTACATAGACGTCGTA
TCACACTGTATATCGTGCGATACACGTGCGTCNCTACATGTATCACACATACCTCTACNGACTTCAATACTCGCTGGGCTGTCTNCGTGCGCGTCTGCTG
AGTCTGCAGCACAGCGATATTNCACTACGTGTGTATGTAGTGCAACTGTTGTCTTCTCTGCTGATTATACTTTCACTTCCTATGCTGTCTCTCGNCTACN
TACCTTCATCCTATGCTCTCCAGCGTTNACATGCTATATGACATGCACGACATATACNTNCTACAGATCTATGCTAATACGATAATCTGNANCTACTCTA
CCTGAGCGTACACATATCGATGTAGCTTGTCACGTNANATCGCNGTTTNTATATATATAAGATTGCAACCTGCTACTCCACGTNATNATNCGATATATAC
TTATCACTNCTCACTTGTTCATTGTACTGTTGATACATCATATCTGCTGTGCATGACATTGCAACGTGAGCTNATACTTGTTGTCTTGCTATATCATNAC
ATAATATATGTATTGATANTAACTATGTACGATATGCGATTANTACTACATACCTACTANATGTAGANCTTGAACTTGCCATNGATTCTGTAACTCTATA
TGACGTTTACATCTTCTTGTGCNATACTTATTTNACTTGAGTCTN
>LE_HBa0103A09_SP6_32656 (trimmed for quality and cloning vector)
C

This is probably not a useful sequence.

Problems:
  • Short cloning insert
  • Low complexity
  • High predicted error rate
 Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
100
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0103A09
Clone
Clone name
hba-103a9
LE_HBa0103A09
C03HBa0103A09
P103A09
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found