Clone Read LE_HBa0103C04_SP6_32742

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0103C04_SP6_32742
Primer
SP6
ID from Seq. Facility
LE_HBa_103_C04-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
541 trimmed for vector and quality, 894 raw
Sequence
>LE_HBa0103C04_SP6_32742 (raw untrimmed)
AGCGTGACGGACCGGTTCAGGTGGTACCCTAAGGAAGTAGGGGGAGAGAGCATAGTAGTTCTGGGCGGTTTCCTCAGCGCAGTAGGGGGGNAGGGGAGGG
GGGGGTTGCGAGCGGCCTGACAGCGGTGATGTTTATCCTTGGCCCGAAACATTGTCTTCATCATGAGAATGGATTGAGTTGGTTGACAATGCCTAATCGT
CATTCACAACTTTGTTTTTCTCCTTGAATCTAGCTCTTGGGACATCCAGTCTGCTAGATAGAGTTAACGCCGCGATGACTTCCCCTAACTTTTTTATTGG
TTCCCTTANATGATCTAGGGACTTCCGCTCTATATAGGCCTTTTTGGAAATGGATCCGACACATTAGCCACGGACTTGACCCCCCCCCGACGGAGAATTC
CACTATTAATTATTTGGCTAATGGCGTCATGTCTATGTCGTATATGACGAGACTTTCCGTTATAATTTGTTCTCCATGCCCTACCTATTGCATCTTGACT
GTGAAAATGTATTCATACTAACGCCAATGGTTTGGGCCAAAATAGAATATCTATCCCCATATCCCAGAGTCTTTCAACTTATTCACCGACCTTATCTAGA
GCACCTAGCTCAAAGATCATTGTAGAGCTAGCAATACATGTCTCTTTTGAAATATCTCTAAGAGACTGCTCCTCTACCAATAGTAAATACATATCCACTA
TTGAATTTTACTTCATTCGTCCGATGATTCAATTTGCATCACTATATCATTCAATATTGTTGGATAATTGTAAAATGCAANAAATATTTTAANTANTAAT
TTTAAAAATTCCACGACTCTGTTTANTGNCATCCNAATGAATTTATTTTGGGAATCACCTTTNNAATCTNAATTNNANTNTNAAANNNNNAATA
>LE_HBa0103C04_SP6_32742 (trimmed for quality and cloning vector)
CGTCATTCACAACTTTGTTTTTCTCCTTGAATCTAGCTCTTGGGACATCCAGTCTGCTAGATAGAGTTAACGCCGCGATGACTTCCCCTAACTTTTTTAT
TGGTTCCCTTANATGATCTAGGGACTTCCGCTCTATATAGGCCTTTTTGGAAATGGATCCGACACATTAGCCACGGACTTGACCCCCCCCCGACGGAGAA
TTCCACTATTAATTATTTGGCTAATGGCGTCATGTCTATGTCGTATATGACGAGACTTTCCGTTATAATTTGTTCTCCATGCCCTACCTATTGCATCTTG
ACTGTGAAAATGTATTCATACTAACGCCAATGGTTTGGGCCAAAATAGAATATCTATCCCCATATCCCAGAGTCTTTCAACTTATTCACCGACCTTATCT
AGAGCACCTAGCTCAAAGATCATTGTAGAGCTAGCAATACATGTCTCTTTTGAAATATCTCTAAGAGACTGCTCCTCTACCAATAGTAAATACATATCCA
CTATTGAATTTTACTTCATTCGTCCGATGATTCAATTTGCA

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.96989
Expected error %
3.2009
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAU89783.1| Score 108 E Value 2e-27 Identity 57.30% Align. Length 460bp (85.03%) Frame 1
putative retrovirus-related pol polyprotein-like [Solanum tuberosum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT38766.1| Score 91 E Value 2e-29 Identity 52.00% Align. Length 521bp (96.30%) Frame 3
putative polyprotein [Solanum demissum]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0103C04
Clone
Clone name
hba-103c4
LE_HBa0103C04
P103C04
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found