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Clone Read LE_HBa0104P18_T7_34163

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0104P18_T7_34163
Primer
T7
ID from Seq. Facility
LE_HBa_104_P18-T7
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
1 trimmed for vector and quality, 888 raw
Sequence
>LE_HBa0104P18_T7_34163 (raw untrimmed)
TTCGCGGATTTATCGCAAAATAGTTTGACGACGACTCGGTTCACTTTATACATCATTACTTGCGTGTAGGGGGAGAGGGGACACATCCGACACTTCCATT
CTAGCCNACGTACGCTAGACATACTTCCTCACCCCTACACTCGACAATCTCCTATGCGAGAAAAATAACCCATATTACATATCAGCCGAGAGTGTCGCAT
ACTATTAGATGCGATGTGATGTTTAGTGAGGGGTCCGAATACCGCCGCGGCGCGCTGCTCCTGCTGTACGGTGGCGCTAGAATGTGTCTCGCCCCGGTCC
CATTCCACTTAACATATGCAGCGGACTGACGCGTCTTTGTAGGCAGTAAGTTGCCGTTTCTCCACACTGATATTGTTCCTCACGTAGCCCCTCCGTGTTC
GCCTTCTTCTTCTTGCCTTCTTACTTCCTTTGTGTTCCCTTCTCGTATGACTAGTTGTTCTCCAACACCGCGAAGAGAGGTGGAAGAACGTGCCACTCTT
GAGAGAGCGCTTGTAGCCTTCGCGTAGCCTGCGACCTCTATCCTCCATCCTCTCACACTCTCGTCTCCGACTCACTCAGAAAACGCAGCTCCTATCATCA
ATCAGCAGGAACGCTCTCTTCAAGCGCAAATACGTCATTCTATCCTACAGCCATCCTCTATCTACATCTTACCTCCTCCACGGCACCCGTACCTGTGTTG
ATGTCTTATCACGGTACCCTTTTCTATTTGTCCTCAACTCTTCTTTGTTGTGCTCTTTGATATTTCCTTTTTCTGCTCTGTTGCTTGNGGTATGCTCTCC
CTCTTGCTCTCGGCGCTTCCCTGCGGCTGCACATCGTTGCTTCTATCGACATGCACACGATTACATGCTCAGTACCAACGCTCGCGAA
>LE_HBa0104P18_T7_34163 (trimmed for quality and cloning vector)
T

This is probably not a useful sequence.

Problems:
  • Short cloning insert
  • Low complexity
  • High predicted error rate
Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
100
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0104P18
Clone
Clone name
hba-104p18
LE_HBa0104P18
C08HBa0104P18
P104P18
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found