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Clone Read LE_HBa0201G12_SP6_360106

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0201G12_SP6_360106
Primer
SP6
ID from Seq. Facility
LE_HBa_201_G12-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
2 trimmed for vector and quality, 1249 raw
Sequence
>LE_HBa0201G12_SP6_360106 (raw untrimmed)
NCCGCAAATCAGCTGTTTNNNNNNNNNNNNNNNNNNNNNNNNNGNNNNNGNAAAGNANNCAGAAAANCCNNGAAGAAGACAGAGCCCCCCCCCATTTTCA
GGGGGAGGGCACCTCATCAAAGCATTACACCAATTAAAATGAGGAGCCGCCCCTTTTCGGGAGGAATCATCTATATAAGCGACTACATCGTGTCAAGGAA
GAGGTACAAACCACCTCAAGAGATCATGTCGCGCGGAATAAACCAGAGAGAGGAGTTCGAACAACAGAAAAGGAGTAGGAGTGGGAAAGAAGACACACAC
CGCGCCGGAAAAGGGAAGGAGAGGGAGACCCGATTTGATCGAAGCGCTCTCCGGAAGAGGAGGGCAGACGGGAAGCGGAAAACCCAAACGACACGCCATA
AGGATGACGAGGATACGACAAAAGAAGGGAGGACAGGCGAGGACGCCTGAGTGGCATGCGAAGAGCAAGTATCAAAAGGATGAGAGGTAACCAGAGCGAG
ATATCAAAACGCAGAAGGCAAACGCCGAAAACTCAAGAATAAGGTCAGAAGCCAGATAAAACATCGTACATAGCCTGAAGGACAAAAACTGAGTATAGTG
AGCACGAACTAAGCCGCTCAGAGCTGGAATCGTGCACGGGTCAGTAAAAGAAGGGAGACAATGGGTTACAACATGCGCGAACACGACAGGGGTGAAAAAT
AGGGCGGAGACTCACTACTCAGCATTCGACACAAAAGACAAGAATTATAAGAACTAGAGCAGAATAATCACGGCCAAGTTGCAGAAACCACTCAGTACAA
ACTAGCACTCGACGTGCTATGCACGAATAGATAAGAGACGTTTCATATATAGAGAGACAAATCCTATGAACGACAAAGACCGAACATTAATTCATAGAGA
ATACATCTACTATGGAATATATGGCACAGATCTAACCCAAAAACTGGCGTCAAATAGAATAGAGAGATATGATAGAGCGGCACAACCTATGACAAACACA
TGTTACGGTGAGAAACAGAGCAAATAAAAAAGAAAACAGGACAAGAGAATCATTTAGTCCTAGAAATTAAGAACCGACAGTGCATAGGATGAGAGAACTA
GTGTATGCTCAAGAGATATCGATCAACCAGAAATTCTATCACGCAATCAAAATACAATCCACAAGAAGCGAAAAAAACAAGACCACAAGAACTGAGAAAG
ACAATGCGTTACAACGAAAAGACGCAAGCTATCATAACAGGAGAGTACN
>LE_HBa0201G12_SP6_360106 (trimmed for quality and cloning vector)
AG

This is probably not a useful sequence.

Problems:
  • Low complexity
  • Short cloning insert
 Warnings:
  • Not screened for contaminants
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
1.18961
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0201G12
Clone
Clone name
hba-201g12
LE_HBa0201G12
C12HBa0201G12
P201G12
Clone type
BAC
Contamination
none
Estimated length
85,974
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found