Clone Read LE_HBa0111O17_T7_36417

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0111O17_T7_36417
Primer
T7
ID from Seq. Facility
LE_HBa_111_O17-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
639 trimmed for vector and quality, 782 raw
Genbank Accession
DU088687
Sequence
>LE_HBa0111O17_T7_36417 (raw untrimmed)
CCCGGGTCCCGAGGGATCCTCTAGAGTCGACCTGCAGGCATGCAAGCTTTCTCAAACTAGGAAAAAAAATACTTTAAAGGCGCACAGAGAGGGAGCAGGT
TAAGAACCTGAAAATTTTGGGATTGTCTGGTTCCATTACCAAAGGACGCTTGCAAAGCTTCTGAAACAGATTGAATGTCTACTCCATCAGGTAGAAATCC
CAGAGAAAGAAAGTCATTTGCTAAACCCAGAGAGTCTCGATTAACGAAGTGAACAAGCTGCAGTGCACAGCACTTATCAACTACCAAACATGAATTTATT
ACGAATACTTGCCAGCTTTTGCTTACAAAATCAATTACGTTAAAAATAGGAAACCCCATGCGTGAAAAATAAATAAGCAAATAAATAAATAATAATTGCA
AAGATCCTGGAGTGCAGTCATCTGTTGAAACACTGGACATGTAATAGATCAATAATACTTAGACAATCCATGCAGACATCAAGATATGCAATCAGTGGCG
GATCCAGAATTTCTTAGTTATGGGTGCTCAACTATTTGTAATTTGAAGTTGGTACCAAAATGGATGCTCAATTTTACATATTCATACAAATTATATTAGT
CTTGTCTCCAAATGTAATGTGTGCTCACGCACCCATGCACTTGAATGTGCATCCGCCCACTGTATGCAATGCCCTAAAGAATTGAAGTTTCAATTTTAGA
AATTGTTTAACACACATGCCCACACTATCTTGCCTTTTGTAATGCAGTCATCTATACCGACTTTGGGATGCGCAATAGGTCA
>LE_HBa0111O17_T7_36417 (trimmed for quality and cloning vector)
AGCTTTCTCAAACTAGGAAAAAAAATACTTTAAAGGCGCACAGAGAGGGAGCAGGTTAAGAACCTGAAAATTTTGGGATTGTCTGGTTCCATTACCAAAG
GACGCTTGCAAAGCTTCTGAAACAGATTGAATGTCTACTCCATCAGGTAGAAATCCCAGAGAAAGAAAGTCATTTGCTAAACCCAGAGAGTCTCGATTAA
CGAAGTGAACAAGCTGCAGTGCACAGCACTTATCAACTACCAAACATGAATTTATTACGAATACTTGCCAGCTTTTGCTTACAAAATCAATTACGTTAAA
AATAGGAAACCCCATGCGTGAAAAATAAATAAGCAAATAAATAAATAATAATTGCAAAGATCCTGGAGTGCAGTCATCTGTTGAAACACTGGACATGTAA
TAGATCAATAATACTTAGACAATCCATGCAGACATCAAGATATGCAATCAGTGGCGGATCCAGAATTTCTTAGTTATGGGTGCTCAACTATTTGTAATTT
GAAGTTGGTACCAAAATGGATGCTCAATTTTACATATTCATACAAATTATATTAGTCTTGTCTCCAAATGTAATGTGTGCTCACGCACCCATGCACTTGA
ATGTGCATCCGCCCACTGTATGCAATGCCCTAAAGAATT

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
0.960672
Expected error %
0.699317
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At5g24970.1 Score 82 E Value 3e-16 Identity 26.70% Align. Length 149bp (23.32%) Frame 2
68418.m02957 ABC1 family protein contains Pfam domain, PF03109: ABC1 family
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAP40349.1| Score 82 E Value 1e-14 Identity 26.70% Align. Length 149bp (23.32%) Frame 2
unknown protein [Arabidopsis thaliana] gb|AAO42315.1| unknown protein [Arabidopsis thaliana] ref|NP_197879.2| ABC1 family protein [Arabidopsis thaliana]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
ref|XP_477964.1| Score 76 E Value 8e-13 Identity 22.70% Align. Length 149bp (23.32%) Frame 2
putative ubiquinone biosynthesis protein ubiB [Oryza sativa (japonica cultivar-group)] dbj|BAC84387.1| putative ubiquinone biosynthesis protein ubiB [Oryza sativa (japonica cultivar-group)]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0111O17
Clone
Clone name
hba-111o17
LE_HBa0111O17
C08HBa0111O17
P111O17
Clone type
BAC
Contamination
none
Estimated length
118,385
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found