Clone Read LE_HBa0008L24_T7_3647

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0008L24_T7_3647
Primer
T7
ID from Seq. Facility
LE_HBa_008_L24-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
782 trimmed for vector and quality, 948 raw
Genbank Accession
DU023731
Sequence
>LE_HBa0008L24_T7_3647 (raw untrimmed)
CAACCCGGGTCCGGGGGGACCTCTAGAGTCGACCTGCAGGCATGCAAGCTTTTCCTACACCAGGGGATAAGGCAGTTAAACTATTCACCTCCTTTAATTA
GCTCACCCCCCCCCCCTTTCTTTTCTCTTCATTCCTGACCAAATTAGCTAGTAAGCACCATCAATCAATTATTTCTGTTCCATTTTGTGCTAAATATGTT
TTCAAATGTTGTATATAGTTCTGAAGACAGCAGTTTAATGTTTTGTCTGGCTAACTGCTGTTTTAAGCTCATTGTTTCAGCTTGCAGTTTTGCAGCAAAA
CCTGTCTGCTGTCCATGAAATCTGGAAGGAATGTAGTAAATTTTACAGTCTCAGCCTTCTCTCTCTGAGGAAGTTTATATGGTCCTTCACGGAGCTGAGA
GATCTGAATTCAGCCCACACAGCCTTACAGCACATGGTGAGATTGGCTTTTACGGAAAACTCTTACATTAGTAGAACTGCCGAGGGGAGGTTTTGTGATT
TAAGATTGGATATTCCAGCACCTTCCTCTGGCAATTGGAGTTTTATCGATGTATCTGTCGACACCGTGGATAGCAGCAATTTTGATATGGAAATACAAAG
TCTTGGCAGAAAAACATTAAGTGCATCTGTTGTGAAGCTTTTGAGGTGGTCCTTCAATGATGTTATGCATGCTTGTGCACAAGTTCAAAATTGTGATTTG
GCTGAACAGTTGATGTTACAGGTATTGCTACAATATCCAGTTGCTATGATGTCCCCATCTGTCTAATGTTAGAAAATTTATGCAGGATCGGAAGGATAGT
CCTTAGGTCCATATGACTAGGCACATATCATTGTTTTACCCAAAATAAGCCAATAGCAATTGTCTCAACTTTCTTTCTCAAAAAAAAATGCTTAATTTCC
AAAGAAATTCCTTTTGAATTTCACTAAACTATTCTTTTTTATGATCAA
>LE_HBa0008L24_T7_3647 (trimmed for quality and cloning vector)
AGCTTTTCCTACACCAGGGGATAAGGCAGTTAAACTATTCACCTCCTTTAATTAGCTCACCCCCCCCCCCTTTCTTTTCTCTTCATTCCTGACCAAATTA
GCTAGTAAGCACCATCAATCAATTATTTCTGTTCCATTTTGTGCTAAATATGTTTTCAAATGTTGTATATAGTTCTGAAGACAGCAGTTTAATGTTTTGT
CTGGCTAACTGCTGTTTTAAGCTCATTGTTTCAGCTTGCAGTTTTGCAGCAAAACCTGTCTGCTGTCCATGAAATCTGGAAGGAATGTAGTAAATTTTAC
AGTCTCAGCCTTCTCTCTCTGAGGAAGTTTATATGGTCCTTCACGGAGCTGAGAGATCTGAATTCAGCCCACACAGCCTTACAGCACATGGTGAGATTGG
CTTTTACGGAAAACTCTTACATTAGTAGAACTGCCGAGGGGAGGTTTTGTGATTTAAGATTGGATATTCCAGCACCTTCCTCTGGCAATTGGAGTTTTAT
CGATGTATCTGTCGACACCGTGGATAGCAGCAATTTTGATATGGAAATACAAAGTCTTGGCAGAAAAACATTAAGTGCATCTGTTGTGAAGCTTTTGAGG
TGGTCCTTCAATGATGTTATGCATGCTTGTGCACAAGTTCAAAATTGTGATTTGGCTGAACAGTTGATGTTACAGGTATTGCTACAATATCCAGTTGCTA
TGATGTCCCCATCTGTCTAATGTTAGAAAATTTATGCAGGATCGGAAGGATAGTCCTTAGGTCCATATGACTAGGCACATAT

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
0.971946
Expected error %
1.09385
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At1g76280.1 Score 122 E Value 2e-28 Identity 15.10% Align. Length 455bp (58.18%) Frame 2
68414.m08858 pentatricopeptide (PPR) repeat-containing protein contains Pfam profile PF01535: PPR repeat
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAF17637.1| Score 122 E Value 8e-27 Identity 15.10% Align. Length 455bp (58.18%) Frame 2
T23E18.21 [Arabidopsis thaliana]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
ref|NP_177755.3| Score 122 E Value 8e-27 Identity 15.10% Align. Length 455bp (58.18%) Frame 2
pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0008L24
Clone
Clone name
hba-8l24
LE_HBa0008L24
P008L24
Clone type
BAC
Contamination
none
Estimated length
111,556
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found