Clone Read LE_HBa0113D06_T7_37403

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0113D06_T7_37403
Primer
T7
ID from Seq. Facility
LE_HBa_113_D06-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
597 trimmed for vector and quality, 798 raw
Genbank Accession
DU085806
Sequence
>LE_HBa0113D06_T7_37403 (raw untrimmed)
CCCGGGACCCCGGGGATCCTCTAGAGTCGACCTGCAGGCATGCAAGCTTAATGAGTTATTCTCTTTAAGGGGGATGGTGCCTTGAGGTATCAAGGAAGGT
TGTGTGTACCAAATGTAGATGATTTGAGGAACCGGATTCTTGAGGAAGATCATGGGTCCTGTTACTCCATTCATCCGGGGTCAACAAAGATGTATCATGG
CCTTAGGGAAGTGTATTGGTGGGAAGGTTTGAAAAAGGACATAGCGGAGTTCGTTGCTAAGTGTCCAAATTGCCAACAAGTGAAAGCCGAACATTAAAAG
CCAGGTGGTTTACTTCAAGAAATCCAAATTCCTACTTGGAAGTGGGAAGACATCAATATGGATTTTGTGGTAGGTTTTCCTAAGAATCAAAAACAATATG
ACTCTATATGGGTTGTGGTGGATAGATTGACGTAGGCTACGACTTAAACTTTCATCACGTCAACTGATCCAACATAAGATTATGCAATCATCTCCCCACA
CCATATTATGAGTACCTACGATAGGCTGGATTACATCCCCTACCAAAGCGTTGCACAATTCAACTCTAAGATATGAAAGCATTACCACATGTATATGAGT
AATACTGAGGTGATGATAAGTATGAAATGTCTGAATGCATTTGGATAGTGACTTTTCTATTATTAATACCTGAATTATTTGTTTTGGTTGTTATTGTACA
CGTATTGAATAAAAATGAGGAAAATAAGTGGCGTTACGTGAGTTACTCGTTATATTTTATTATCTCTTTGTTTTTATGAATTGATTTCTTTTTGTTTC
>LE_HBa0113D06_T7_37403 (trimmed for quality and cloning vector)
AGCTTAATGAGTTATTCTCTTTAAGGGGGATGGTGCCTTGAGGTATCAAGGAAGGTTGTGTGTACCAAATGTAGATGATTTGAGGAACCGGATTCTTGAG
GAAGATCATGGGTCCTGTTACTCCATTCATCCGGGGTCAACAAAGATGTATCATGGCCTTAGGGAAGTGTATTGGTGGGAAGGTTTGAAAAAGGACATAG
CGGAGTTCGTTGCTAAGTGTCCAAATTGCCAACAAGTGAAAGCCGAACATTAAAAGCCAGGTGGTTTACTTCAAGAAATCCAAATTCCTACTTGGAAGTG
GGAAGACATCAATATGGATTTTGTGGTAGGTTTTCCTAAGAATCAAAAACAATATGACTCTATATGGGTTGTGGTGGATAGATTGACGTAGGCTACGACT
TAAACTTTCATCACGTCAACTGATCCAACATAAGATTATGCAATCATCTCCCCACACCATATTATGAGTACCTACGATAGGCTGGATTACATCCCCTACC
AAAGCGTTGCACAATTCAACTCTAAGATATGAAAGCATTACCACATGTATATGAGTAATACTGAGGTGATGATAAGTATGAAATGTCTGAATGCATT

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
0.967767
Expected error %
2.16809
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT39297.1| Score 202 E Value 4e-51 Identity 19.20% Align. Length 515bp (86.26%) Frame 3
putative gag-pol protein [Solanum demissum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT38792.1| Score 202 E Value 5e-51 Identity 21.30% Align. Length 416bp (69.68%) Frame 3
putative gag-pol polyprotein [Solanum demissum] gb|AAT38791.1| putative gag-pol polyprotein [Solanum demissum]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0113D06
Clone
Clone name
hba-113d6
LE_HBa0113D06
P113D06
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found