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Clone Read LE_HBa0214N11_SP6_375416

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0214N11_SP6_375416
Primer
SP6
ID from Seq. Facility
LE_HBa_214_N11-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
3 trimmed for vector and quality, 1688 raw
Sequence
>LE_HBa0214N11_SP6_375416 (raw untrimmed)
TGATAGGTAAGGGAGATAGGATNGTAATGATTAGATGTATATATAGTATAGAAGGAGATGAGAAGATCCCGTTATTTTTGGGGAGAGGAGAGGGGATTGA
TAAGTTAGGAGAGATGAGTTGTTATAATGTAGGGTGGTATGATTTTATGATGTAAAATTGGTGTATATAGTGGTGTTGTAAAAACTAAATTATGTGTTTA
AATGGTGATTATGGTGTGTGAAGTATAATAATAATGCAGAAGTGATAGTACAATTTAGTTGATTCTGTATATGGTGGTGATTTAATTAGAGTTGAGAAAG
TGTTGTGTAGGGTTGAAAGTTGTAGTATATATATTAATGAGACTGTATAATGAGTATGATGGATGAGTAGTAATATAGAAATTGAGTAGTAGGTGAAGAT
ATGAATATATTAGAATTTTTATATATAGTGTATATGTAATATATAGATGTTAAGTATTAAGGTAATATAATTAGTATGTTATACATAATGGAGAATGTAT
AATGTGTGTATTTATGAGAAGATAAGTTCAAGGTAGTGTGGATATTGAGGAGAGTAGTGTATCAGTAGTGATAGTAGTATGAATGAAATTAATGTAATAT
AAGTTGGTAAGTTAAAAGGTGAGTTTGATATATATATTTAGTAAAGTTAGTAGAGTAATAATATGATTGAGTATATAGGTGAGGTTAGATATGTTTAGAT
GATTGTTATCATTAGATATGTGATGTATAGATTGTTTGTAGGGAATCATGTAGAGGTAGATAATGAGAGATAAGTCAGAGAATTGATATGATATTATGTA
TAATAGTATGTATATGAAGTTGGAAATGAGATAGATAATTGTAGATTAATATTGTTTATATATCATTATGATGTGAAAAAGACATAGAATATATTGGTGA
TATGGAAGCATTTATCATGAGTGATATGAGTAATTATATTAATGTGTTATGGCCCCNNCNCCGCGTGNNCCCTATAATGATAGAGAATATTGTGTATTGA
TGCATAAGTAATATTGTGTAAGTAGTAGTAGGTATATAATATGAGGTGGTATAGAGTGAGAAGTAGATATAAATGAAGTAGATTATGTGTGCAGGTATAT
TGAGGGAATAGAATATCATAATTGTGGATGGAGGATGAATAGTAGATGATTAGTAGTGGTATAAATAGTATCAGTATTAATGAGTAGTGATAGTATGAGT
TAATGACATGATTGTAATAGATCATATTGTTATAGTATAGTAAAGAGAGTAGATGTAAGATGAGATATATATGTAGAGTATAGTGTGAGTATAAATATAT
TAGTGATAATGATATTGTAGATATGATATNGTGTAATATTGATTATATAAGATGAATTAGTGAGATTGATAGATTATAATAACANCCCCCCCCCCAGNTG
GAGAGTANGTAATTAAGGAATNATTAATGAGTAGTGATGAATGNATGAGAATNATACATGGTGAGATGAGAATATGACGAAATGTATAGAGTGTTATGTG
CAATTNTTATATAATATATGCAAGTATTTAAGTAGAATAGATATAGGTGCTCTATTAGTGATATGTGAGTACTGNACAGGTANANATATAGATGATAGTA
TGAGTGTATATGTGTGATNAATNGATAGTNCGTGATTATCGTGTGACTAGTATGATGGACTTACTTAGTAGNGATGTAGTTTNTAGTN
>LE_HBa0214N11_SP6_375416 (trimmed for quality and cloning vector)
GTA

This is probably not a useful sequence.

Problems:
  • Low complexity
  • Short cloning insert
 Warnings:
  • Not screened for repetitive elements
  • Not screened for contaminants
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
2.57829
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0214N11
Clone
Clone name
hba-214n11
LE_HBa0214N11
P214N11
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found