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Clone Read LE_HBa0113M01_SP6_37824

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0113M01_SP6_37824
Primer
SP6
ID from Seq. Facility
LE_HBa_113_M01-SP6
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
95 trimmed for vector and quality, 780 raw
Sequence
>LE_HBa0113M01_SP6_37824 (raw untrimmed)
GCTTTAAGTTGATTCTTTTTGCGCATTATGGGATGTAGCGTAGACATTTTTGAACACTGTCTATTATCCAGTGCAGAGAATTATAGTTCTCTATATGTTT
GTGTGGGGTGGGAGGAGGGGATAACCTACTAGTGTTTGCCAATGAAGCGCGTAGTTGAGTTCGCTAGCTACTACTAACAATATGTCAGCGGATTCACTCC
TATAGCTTCCCTTTGATGAACTTAACGTAACTAAATGTTCCATTTGTATGGACTGATTATAATGAGGAAAACTTTCACAATCTCTATACTACATTGACTA
ACACTACTATCCTTTCCTTACCAGTGCAGGGAAGAACTTCGGTGTTTATTGAGATGCATCCTATTCTTATTTGGGTGCAACTCTACTGTCGGATAAGAGA
GTGACTGCTGTCGCTTCAGAACTATTGGAAGAGCATGAACCTAACAATCCCACTGGTGATTTATAAATAAGACACTACTTCATTTCGTTAATCCTTTTGC
AATACTTATTAATATTTTTATTGTTTTGTGACCTATACTGTTCTTCTGAGTCATATTTTTCATTTTGGTTGTACTAAAAAATTATTTACATACTGTTATT
CGAATTTTCATGGGAGGTCCTCGTGCTACCATTGTGGTTTCAAGAACGCAGCACATTGATTAAAAGGTTTAGTTAGTTTTATTTTATAGTGTTTATTAAC
TTTAAACTTTAAATCACCGTTCTTTTTACACACAAAAATTCTTCCTGCTGACAGATTCCTAATGGTTATGTTGGTGTTTC
>LE_HBa0113M01_SP6_37824 (trimmed for quality and cloning vector)
TATGGGATGTAGCGTAGACATTTTTGAACACTGTCTATTATCCAGTGCAGAGAATTATAGTTCTCTATATGTTTGTGTGGGGTGGGAGGAGGGGA

This is probably not a useful sequence.

Problems:
  • Short cloning insert
Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.898684
Expected error %
0.530022
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0113M01
Clone
Clone name
hba-113m1
LE_HBa0113M01
P113M01
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found