Clone Read LE_HBa0243P17_T7_378597

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0243P17_T7_378597
Primer
T7
ID from Seq. Facility
LE_HBa_243_P17-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
2 trimmed for vector and quality, 1760 raw
Sequence
>LE_HBa0243P17_T7_378597 (raw untrimmed)
CCTCATTTTTCTCATGAATGCTTCAGATATGCGCGAAACCCTTATCACACCGATGTAACAGACCCCATCTCCCCCCCCCCCTTTTTAGTGGACGTTACAC
CACCAAGCATTAGTGCTACACAGTACTACATGGCATTCGACCCTCGCCCCCTCTGAAGCCGTAGTAGCACGCATACAATCACTCAGCCAGAGTACACACC
TCCCCACATCTCCATGTACCTGTGAGTGACCTATAAAAGCGTTACAATCTACTCTACGTATGCACTCAGCAGCAGACACCTCTCTCAGATAAGCAGAACC
TTATACTAGCATCCTCTATTATCCAGTCTTTCACGCAGTCTGCCAGGCCCGATTACTACACTCTTTCCACTATCAATCTCCCCAATGCCACACACAGTGT
ACTGTGTTCAGTACTCTGCTAAGACATACCTGATTACTTCTAATATCTCTCAGTCAGATCCGACCTCAGCGATAACACCATAGTCATTCGATTCACATTG
AGCTAATGTAGACTACTATCTTGAGAGAGAACCGCATCCATCCGTACTACAACCTGTAGCTACACCTTCACTGACTTCTATCGAGCTTCCTATGTAATAG
ACAACGCGCTACATCTTGACGCTGTCGCTGCACTTGCACTATGGATCCGCTGACTTTAATGCCACATGATGCTCTCCTCCACCCTGTCTCCTACTCTTGT
CTCGTACTCCTCACCCTCCCCATAGACTGCACCACGGCACCTCACTCGTGAACACAACCCCTGTCGATGAACCAACTGCTGTCATACATATAGACACTAT
ATCTCCGCACAACAGCGAGTAGGGCTTGTGAGCAGCAACCTCTATTCCTCCTCTATGTAGAGCGAAGCTTAACATAGACACCTTTCCACCTCACGCTCCC
CTCCACAACTATATGTGTTCTGTTAGTACAGTATCTCATCATCTACTACCTAAACATACCCCTCCATAATGGCCGATCACATGAGACACTATACTTACAA
ACGGGCTGTAGAGGACTGCATTCGCTTTGCGTCTTTCACACAGTACATACACTCTCAGAGTAACGCTATGCTAAACACCTACTTCAAATGCAGACGCCTC
TCCTATGACGTGGCCCGACCAACGGTGCAAGATACTATGATGTGCAACAACGTACTGCATGCTACTTCGCTTGCCCCGCTCTAATCTCACGACTCTAACT
TTCTCGTGATTGGTTTGCTACTGCTCAGCCTACTAACACGTCTGTCTCTGATTCGACACTGATACCCTCATCTGACGCTCTCGCCCTACCTACTCAATGC
GTGATACAACGTCGTACACCCCTAGTCCTGATGAGCAGTTACATCCGTCAANAACTGCCGATTCACTGGGGCGTAAATGTAACTCACCACGCCTGCGCGC
GTAACATGCTGCTTGCTAGAGTGTGTCATACATGAATGCTCGCATTTTGCGCAACCAACTATCACTGCACAATCGCCCTCATAAATCTATTTAGACTTCT
ACATGTGACCAGCGTGCTGTATCATCACAGCATCGTGACGATCACACTTATCCGCCGATCTACTACAGACGTCCAGCCTGTACGGCTTCATGCTAATCGT
CAATGAGGAGTCTGTGCTCTTACAACCATAATTGACCATCACTTATGATCTTCGCACTAATCTAACGCTCGCATCACGCCAATATCTGGACGATGTCTAT
CTCTACTGCGACCATCTCCGAGAGATGTCAACTATCAGCGTACGCNTCACAAACATTCGA
>LE_HBa0243P17_T7_378597 (trimmed for quality and cloning vector)
CA

This is probably not a useful sequence.

Problems:
  • Short cloning insert
  • Low complexity
 Warnings:
  • Not screened for repetitive elements
  • Not screened for contaminants
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
0.897164
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0243P17
Clone
Clone name
hba-243p17
LE_HBa0243P17
P243P17
Clone type
BAC
Contamination
none
Estimated length
98,189
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found