Clone Read LE_HBa0113P12_SP6_37990

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0113P12_SP6_37990
Primer
SP6
ID from Seq. Facility
LE_HBa_113_P12-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
650 trimmed for vector and quality, 744 raw
Genbank Accession
DU086308
Sequence
>LE_HBa0113P12_SP6_37990 (raw untrimmed)
ATTTGAAGTGAGCTAGACTTCCCATGCTTCCCGCCTTCCTACTTAAAGCATCCGCTACAACATTCGCCTTCCCCGGATGATACAAAATAGTGATGTCGTA
GTCCTTCAGTAGTTCCATCCATCTCCTCTGTCTCAAGTTCAAATCTTTCTGAGTGAAGACATACTGAAGGCTACGATGATCCGTGTAGACCTCACACTTA
ACTCCATATAAATAGTGTCTCCATTGCTTTAATGCAAACACTACCGCGGCCAATTCCAAATCATGAGTTGGATAGTTACGTTCATGCACTTTTAATTGTC
TTGAAGCATAAACAATCACATTCTTCTCTTGCATTAGCACTGCACCCAAACCCGAATAGGATGCATCACAATAGACAATGAAGTTCTTACCTTCCACGGG
CAAGGTGAGAATTGGTGTAGTAGTCAACAGAGTCTTGAGCTTCTGAAAGCTTTCCTCACACTCATCCGACCATACGAATGGGACATTTTGCTTAGTCAAG
TTCGTCAGTTGGGAAGCAATAGAAGAGAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGCC
TTACCCAATTCTTCACCGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTC
ACACTTAGAGAATTTGGCATAAAGCTTTTTCCTCCCTCAACATT
>LE_HBa0113P12_SP6_37990 (trimmed for quality and cloning vector)
CTTCCCATGCTTCCCGCCTTCCTACTTAAAGCATCCGCTACAACATTCGCCTTCCCCGGATGATACAAAATAGTGATGTCGTAGTCCTTCAGTAGTTCCA
TCCATCTCCTCTGTCTCAAGTTCAAATCTTTCTGAGTGAAGACATACTGAAGGCTACGATGATCCGTGTAGACCTCACACTTAACTCCATATAAATAGTG
TCTCCATTGCTTTAATGCAAACACTACCGCGGCCAATTCCAAATCATGAGTTGGATAGTTACGTTCATGCACTTTTAATTGTCTTGAAGCATAAACAATC
ACATTCTTCTCTTGCATTAGCACTGCACCCAAACCCGAATAGGATGCATCACAATAGACAATGAAGTTCTTACCTTCCACGGGCAAGGTGAGAATTGGTG
TAGTAGTCAACAGAGTCTTGAGCTTCTGAAAGCTTTCCTCACACTCATCCGACCATACGAATGGGACATTTTGCTTAGTCAAGTTCGTCAGTTGGGAAGC
AATAGAAGAGAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGCCTTACCCAATTCTTCACC
GTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTG

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.978302
Expected error %
0.0216119
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT38745.1| Score 326 E Value 3e-88 Identity 23.90% Align. Length 647bp (99.54%) Frame 1
putative polyprotein, 3'-partial [Solanum demissum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT66771.1| Score 325 E Value 4e-88 Identity 24.10% Align. Length 647bp (99.54%) Frame 1
putative polyprotein [Solanum demissum]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0113P12
Clone
Clone name
hba-113p12
LE_HBa0113P12
P113P12
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found