Clone Read LE_HBa0114H06_T7_38363

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0114H06_T7_38363
Primer
T7
ID from Seq. Facility
LE_HBa_114_H06-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
570 trimmed for vector and quality, 794 raw
Sequence
>LE_HBa0114H06_T7_38363 (raw untrimmed)
GCTGCGGACCCGGGGGATCCTCTAGAGTCGACCTGCAGGCATGCAAGCTTCACAAAGACTCCAAGACAGCCAAAGTAAGTGTGGTTGGAAATGGTCCATA
CAGATGTTTGGGGACCTTCTCCAGTATCATCACTTGGAGGATCAAAATTCTATGTTACCTTCATTGATGATTTCAGAAGGAAGGTATAGGTTTACTTCTT
GAAGAATAAGTCAGATGGATTTGCATCTTTCAAGAAGTAGAAAGCTGAAGTTGAGAATCAGACCGGTTTGAAAGACAAGCGCCTAAGGTATGACGATGGA
GGAGAGTATGACAAATCAGAGCACAAGCAGTTTCTGCTGCTGAGGGAATCAGATTGATGAGAACAGTTCCTGCTAAGGTAATAAAGAATGAAATTATTGA
GAGGATAAACATAACATTGAATGAGCATGCAAGGAGTATGAGGATACACTGTGGGCTACCAAAAACACTTTGGGCAGATGCCATGAGCACAGTTGCATAC
TTGATTAACAGGGGACCATCACTTCTTTTTGGGTTCAAGATTCCTGAGGAGGTGTAGACTAGAAAAGAACTCAAGTACTCAAATATTAGGCCTTACTATT
TATTCTTCATTTTTTCGCTGTAACAAAAAATTTCTCTGATTTTATAATATTTATGCCCCAACCGCCGTGGAAATTTACTCCACGGGGTGGTACCACTAAA
CATTGGCTCTCTTTCCCCCTTTTGATCTTATCTCATTATTCCCTAATGTGTTATCGGTTTTTTATTCGACCCCTTTGTGGTTTGTTTTATTCTT
>LE_HBa0114H06_T7_38363 (trimmed for quality and cloning vector)
AGCTTCACAAAGACTCCAAGACAGCCAAAGTAAGTGTGGTTGGAAATGGTCCATACAGATGTTTGGGGACCTTCTCCAGTATCATCACTTGGAGGATCAA
AATTCTATGTTACCTTCATTGATGATTTCAGAAGGAAGGTATAGGTTTACTTCTTGAAGAATAAGTCAGATGGATTTGCATCTTTCAAGAAGTAGAAAGC
TGAAGTTGAGAATCAGACCGGTTTGAAAGACAAGCGCCTAAGGTATGACGATGGAGGAGAGTATGACAAATCAGAGCACAAGCAGTTTCTGCTGCTGAGG
GAATCAGATTGATGAGAACAGTTCCTGCTAAGGTAATAAAGAATGAAATTATTGAGAGGATAAACATAACATTGAATGAGCATGCAAGGAGTATGAGGAT
ACACTGTGGGCTACCAAAAACACTTTGGGCAGATGCCATGAGCACAGTTGCATACTTGATTAACAGGGGACCATCACTTCTTTTTGGGTTCAAGATTCCT
GAGGAGGTGTAGACTAGAAAAGAACTCAAGTACTCAAATATTAGGCCTTACTATTTATTCTTCATTTTTT

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
0.951356
Expected error %
0.414103
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
dbj|BAD34493.1| Score 88 E Value 4e-30 Identity 54.10% Align. Length 508bp (89.12%) Frame 2
Gag-Pol [Ipomoea batatas]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
emb|CAB75469.1| Score 87 E Value 2e-27 Identity 39.30% Align. Length 511bp (89.65%) Frame 2
copia-type reverse transcriptase-like protein [Arabidopsis thaliana] pir||T49313 copia-type reverse transcriptase-like protein - Arabidopsis thaliana
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0114H06
Clone
Clone name
hba-114h6
LE_HBa0114H06
P114H06
Clone type
BAC
Contamination
none
Estimated length
108,445
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found