Clone Read LE_HBa0220A02_T7_384009

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0220A02_T7_384009
Primer
T7
ID from Seq. Facility
LE_HBa_220_A02-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
3 trimmed for vector and quality, 1268 raw
Sequence
>LE_HBa0220A02_T7_384009 (raw untrimmed)
GTATCTTAAGCTTGGGGCCCCTGGAGGGATACTCCTAAAGCGGCACGCCCTGTTTCCTTCTTTTTAGAATTTGTTTTCTTGTTCGCCTCTCCCAACACGG
CTTATTACCTTCACAGATACCTGAAATCAAAACACAGAGGGCCCAAATTGAAAAATCGTTGTTAGAGTAGGGTAAAAGTTTAGGTGGGCGTAGGCCACGC
CATACGCCCCCCCTCCTCCCAAGACAGTACCAACGACCAGCCACGCCCCACAACTCGACCCAGGAGTGCCCGCCACCAGTACTCAACGCTCATCTTTGAT
GTTATTGAAAACTGCACAGCCTTATGCGTATGATATAGCGGTGAGGAAACTAATAGGCCCTACATTGTGATCCACCACCAATTTTACATCCAACCTGTGT
TCAAAATTACTATCCTTTTCTACGCAATCAAGAGATTGATGCTTCTCTATCAATATAGTTCTCACAGATATGCCTCTTTATCTGCTACAAACTGCCCTAC
ACCATCTTATATGTGAACACCATTATTGTGAATAAGAATTACTCCCACACAATCCATATATCCGTGAACTGCAAAAGTGCGACTTTCAAAAAACATCTTT
TACAACCCACTAACCACAGATCAATCGACCAATCCACCATGTAGAATTAATGTCCGATCGCTAACTCCCCACTTGAAACGTTTTTCCTACCACCAAATCT
ACCTCCCTAAACTAAATTTCCTCTCCTAAAACAAGATTTATATTCTTGCCTTTACACCACAAATTCAATCCCAACTAGCTTTACATTGAAACATCCCCCC
ACTTCCATGCCCCAGAAAGAACCACAAAAATGTGGCGTCCTCAAAACCTTCACCTTGGTATTAAACAAATTAAACACCTTGCACTCTCCCGCTCTTTTTA
CCTTCGATAAAAAAAATTGCCTTTCTTCCACGTACCCTCTCTTTTTCAACCAACGGCCTTATACTACCCCATATCTTTTCTTTAAATCATCCCTCAACCT
CCTCCCCCCAAAAAAGACCTTCACACAAATTTTTTAACCTCTCCCGCAAGGGTTTTGCACACGTAAATCCCCCCTCCTAAACCCTCTTCTCTGCAATGAT
ATTCCCAGGAACCCTTTTTTTCTCCACAAAACCATGTTAAAAACATTTTCTCCCCTGACTCATCCCGAAAGAGTTATTCACAAATAAAACATCTATCTAA
AAACACATTTTCTCTGACCCCTTACAATATATCGGTGCATCCCATATAAAACACTGGCTCTCCCACTG
>LE_HBa0220A02_T7_384009 (trimmed for quality and cloning vector)
TTT

This is probably not a useful sequence.

Problems:
  • Low complexity
  • Short cloning insert
 Warnings:
  • Not screened for chimera
  • Not screened for contaminants
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
0.598738
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0220A02
Clone
Clone name
hba-220a2
LE_HBa0220A02
P220A02
Clone type
BAC
Contamination
none
Estimated length
93,719
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found