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Clone Read LE_HBa0215L09_SP6_389012

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0215L09_SP6_389012
Primer
SP6
ID from Seq. Facility
LE_HBa_215_L09-SP6
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
0 trimmed for vector and quality, 998 raw
Sequence
>LE_HBa0215L09_SP6_389012 (raw untrimmed)
NNNCCACACTTGCGGGTTCATCTAGAGATCCCGGGTACCGAGCTCGAATTCGCCCTATAGTGAGTCGTATTGAATTCACTGGCCGTCGTTTACAACGTCG
AGACTGGGAAAACCCTGGCGTTACCCAACTTAATCGCCTTGCAGCACATCCCCCTTTCGCCAGCTGGCGTAATAGCGAAGAGGCCCGCACCGATCGCCCT
TCCCAACAGTTGCGCAGCCTGAATGGCGAATGGCGCCTGATGCGGTATTTTCTCCTTACGCATCTGTGCGGTATTTCACACCGCATATGGTGCACTCTCA
GTACAATCTGCTCTGATGCCGCATAGTTAAGCCAGCCCCGACACCCGCCAACACCCGCTGACGCGAACCCCTTGCGGCCGCATCGAATATAACTTCGTAT
AATGTATGCGTTACTAAGTTATTAAACGATGAGCTCGGACTTCCTTTGTTCATTCCTCGGACAAAATGGGAGAAACGTAACGTCTTACGCCTGACAGCTT
CCCTTCAACACCAGTCATGGAGTTACATTCATAAGGTGAAATTTACGTAAAAAATATTTTATGTCACAGAAACTCGGATTTTTCATAATTCCGTAAATTT
ATATACAAAATTAAAGTTTGACAGGTCGAAGAACATACAATCGCCAGATCTGATGATTCGTCCCATTTTTTTGAAAAAATATTTTTTAAACAATTCAATA
CGAGCGAGAATGCCTGAATTTCAAAGCTTAAAAGAGTGAGACATTGAACCATATTCATTATGAATCAGATTTTAATTTATTGTCAACTAATTTTATAATC
TATGAGTCAGTCATTATATTTTTTGTGAATTCACTCTATTTAACACTGTATGTAGTGAAAATCTAACACATAGTTGCCACCGCATTCCTATTATGAGAAA
AGGGGGAAATTTGGTGCCAAAAATATTTTCTCCCGAGCGGGGTAACCGGGGTTAAAAAATTCCGCTTAAATTTCAATTTTAGAAATCTATTTTTTTAT
>LE_HBa0215L09_SP6_389012 (trimmed for quality and cloning vector)

This is probably not a useful sequence.

Problems:
  • Low complexity
  • Short cloning insert
  • High predicted error rate
Warnings:
  • Not screened for chimera
  • Not screened for contaminants
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
3' read, short insert
Quality trim threshold
14.5
Sequence entropy
not recorded
Expected error %
100
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0215L09
Clone
Clone name
hba-215l9
LE_HBa0215L09
C12HBa0215L09
P215L09
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found