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Clone Read LE_HBa0115D10_SP6_38946

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0115D10_SP6_38946
Primer
SP6
ID from Seq. Facility
LE_HBa_115_D10-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
2 trimmed for vector and quality, 1212 raw
Sequence
>LE_HBa0115D10_SP6_38946 (raw untrimmed)
ATGCAGATCTCTGTCGCTCGCNTCAGGAAATATTCTCTAATANCATCATATATACACAGGGAGCGCTCTACCTAGCAGCAAACGACGGGATNTCTCATCG
CTCACTGAAGAGTGTACGACAGACGTGTACGGACAATATATACTAACCGCAGCTAATCACACTNCGCAAGCTCGGCTNTGTTCTCGTGATAGAGCNGTCA
GCTCCGAGCTAGTGTCACCTNACTGATGCGTGATACTCCACTGNAGCTATCCAATATGTACCAGATGTAAGTTAGGCTGGGGCGTTCTAGCGTGCATACG
ATGTCGACGCCATATGTTATCATACTACAGCGCACCCAGGACGCAGCAACAAAGACGACGTATCNACACGAACGATAGNGGTGACGATGACATAACCCAA
TTTCTTAGTTCCGATCACACCCGATCCTAACGGCGAGTCTCGTACATTGCAGTGGCGCGAGCAGCGCTAGTGAGGTTGACGATGAGTCTGAAGATACGTG
CCGGAGCTAGCATCACCTTATTGCTNGCTAGAAAGCACTCATATATACGGCGTTGTTGAGATACGCTGCACACGCTTCGACGCCTCTCCACGCTCGCGAT
GCGAGCTGAGCACTACCNGCACTCGCTCAACTAGACGATAGCAGTGAAATCGAGACGAGAGCGACATCGATGCTCGTCAGCTATACTAATAGGAGCNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTNNNNNNNNNNNNNNNNNNNNNNNNNNTNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTNTNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNTNNNNNNNNNNNNNNNTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTNNNTNTNNNTTTTNTNNNTTTNNTTTTNTN
TTTNTNTNTTTN
>LE_HBa0115D10_SP6_38946 (trimmed for quality and cloning vector)
GG

This is probably not a useful sequence.

Problems:
  • Short cloning insert
  • Low complexity
  • High predicted error rate
 Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
4.28712
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0115D10
Clone
Clone name
hba-115d10
LE_HBa0115D10
C03HBa0115D10
P115D10
Clone type
BAC
Contamination
none
Estimated length
99,258
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found