Clone Read LE_HBa0217A20_SP6_392585

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0217A20_SP6_392585
Primer
SP6
ID from Seq. Facility
LE_HBa_217_A20-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
2 trimmed for vector and quality, 1352 raw
Sequence
>LE_HBa0217A20_SP6_392585 (raw untrimmed)
ATAAGGTTTTTACTGGCCCCATTACAAACGCCATTTTGGACTGAGACCACGCACTCGGAGTCTCGGTTGTTCACGCCCGTAACCCTTTGCGAACATTCNA
CTCGAACGTTGTACTAATGTAAGCTGAGGAGAGGCATCTCTTTCTGCAGGCCACGATGAGATATCTTGGATCTCCAACCTCTAGCGGAATACACCTCCTC
GTAAACCTCCGACACCGATAATAGCGCAAAGGGAATATTTAAACCTCATGCGTCCAAGGACATGTGCGACAAGCTGCAACATTGGAAGAACGGCTGTTAA
TGAAACACCCTTTAAATAAAGCTCGACACCGGATGCCCAACATGAGAACTCCTTGGTTTAATTCCGCAAAACACCGCGCTCCAAATTTCCGCCGCAACGT
TAGAACGCACGCAACTTCATACATCGACAGAGCACTGTAGACGTCCGTTATATTCGCCAATTACCACTTTTTGTCAAAGTCTAGTTAACACAAGAACTAC
CGTCGGAGGACTTTATTTCCAGAACTCAACAAACAGTATTCTCCTAGAATTTTTATATGGACTCACACGTAAAAACATACACCTGATCTCAAACCGAAAC
CACCTCCCACCTATATAGTATCCAATACTAGAATTCTCTAGTCCCATTGTTCATAAGACTTAACCTCTAACGAATCACGCCCACGCCAAAATCTCAACCT
ATTCCGTTCAGGGGCTCCCCCCGGAACGCCGGCAATACCAAAACAATTTTATTCATATACACTGGTCTTCCTAATTTACACATCTGTAGTCAAAACATTT
GCCACATCCCCCTGCGAGCCGGGTCTATACACACTTTTAAACACAAAAATTTGGTCTCCCATACTTTTTCGGCGGCTGCCCCTCCAAATTTCCTTATGGA
AAATCCTCCCTTCCTTTATAACGCTCGACCACAATTAAGCTGTTGAAGCATAACTTACATACTCAGAACACGCTTGGTATAGCACGCTACACCTGGCTTA
CTTCTTATCGCGGCTATCGTCCTTCAACTTGGTATCACCCATGCGGAGACATGATAAAAACATATATGATATATTCTAGAGGAAAGCCCCCTCATAAATT
ATCTCCCTTCCTAGTACATGCGAGACTGCATATCACCAATTTCCCGCCTCCATCCTACAAACAGCTAACATACTACATTATACTCTCACTCTCTCTCAAC
ACGAGGGGCACACCTCATGACCAACAATTCTCTCCGCAGCTACTCNATCGCACATATATAACACTCTTCATCTACCTATCTATCTTATATGCCCCTATCA
CCTGCACACCTCTCATCCCACCTCCAACAGGCACACACTTAGCTATACAGCG
>LE_HBa0217A20_SP6_392585 (trimmed for quality and cloning vector)
TA

This is probably not a useful sequence.

Problems:
  • Low complexity
  • Short cloning insert
 Warnings:
  • Not screened for repetitive elements
  • Not screened for contaminants
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
2.70499
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0217A20
Clone
Clone name
hba-217a20
LE_HBa0217A20
P217A20
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found