Clone Read LE_HBa0117C11_SP6_39668

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0117C11_SP6_39668
Primer
SP6
ID from Seq. Facility
LE_HBa_117_C11-SP6
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
1 trimmed for vector and quality, 883 raw
Sequence
>LE_HBa0117C11_SP6_39668 (raw untrimmed)
CTCTGAATTCGATCACATGGGATGGTTATCGAATCAATTATGTTGATCGCTCGATTCGGTGCCTGGTGCGCCAGAGTATAGCGGTTGTTGATAATTCATA
CTCCCTGATGCAAAATTTTGCTGACATGTGAGTATATGCGATTGTAACGATATTTGATTGGAGACTGGCATTGTGTGATGCGGAGGAGGAGACAGCGACA
CTGCATGTACGACGCCGGAGCGACGCGCCACGCCGACAGTATCGTAGCGCTCTGGATGGGGGAATAAGCTTAGTGATCATCTCAGTCCAATCGACCTCCA
ANGCCAGACTCTAGATTTCTCTATGCTGTGTGCCGTTTGCTGATCTGTTTTGTCTCCGTTCGTCTCACGCGTGTCGTCTATCTGCTGCTATCACGACTAC
CATATCATACAGGTACCACTAGAAGCCAGGCACAACACATACGGAAACGACGAAAGAGGTAATAAAAAAATACTTGCATAATTCACATACCTTATACTTA
CTGCCATCGTCATAATGATATCTATATTTATCGATCATCCACCGTAATAGCCGTCAGGACGTGTCTAGCTGATCGCAGTTAGTTCTCTAAGCGTAGTATA
CTTTCTCTATACGTTGTCTGTGCTCTCGCTCCCTCTTATCCTCTCGCGTCCGTCCTTGCTGTACGTGGTGTTGAGTGCACTTATTAGTACTGTTTCGGCG
GTTTCTCGCACTGCTGCACGCCTTCTTGCCACAGCCGGCTATTCCTTCACAGTCAACACTTTGACTGATCAGAATGGCTCACTCTAATCTGTGATATGTT
GGTCGTGTCTGATGTATGATTATGCAATCTATCGATTATCTTGTATTTACGTAACACCGACTCTTATTATAGATCTCATTCTA
>LE_HBa0117C11_SP6_39668 (trimmed for quality and cloning vector)
C

This is probably not a useful sequence.

Problems:
  • Short cloning insert
  • High predicted error rate
  • Low complexity
Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
100
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0117C11
Clone
Clone name
hba-117c11
LE_HBa0117C11
P117C11
Clone type
BAC
Contamination
none
Estimated length
67,250
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found